Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_019934.1 Length=39012 Score E Sequences producing significant alignments: (Bits) Value seq1150 86.0 2e-12 >seq1150 Length=8598 Score = 86.0 bits (94), Expect = 2e-12 Identities = 205/307 (67%), Gaps = 11/307 (4%) Strand=Plus/Plus Query 13910 CCGTTCAGCAGCTGGCCTTCTTCCTTCAGCGCCAGACCGTACATGAGGCGGTTGTTGACG 13969 ||||||||||||||| |||||||||||| | ||| ||||| | || ||| || |||| Sbjct 878 CCGTTCAGCAGCTGGGCTTCTTCCTTCACCTTCAGGCCGTAGAGCAGCCGGCCGTCGACG 937 Query 13970 TATGACTGCAGCATTGGCGCATCGTCCATAACCTGACGTGACGCCTGCACCCAGTGGGCG 14029 || | ||||||| ||| |||| |||| | ||| || || | | |||||||| Sbjct 938 TAGGCCTGCAGCTGCGGCACATCTTCCAGGATCTGCTTGGAGGCGCGGATGAAGTGGGCG 997 Query 14030 ATGGTCTTCACGTTTGCGGTCTGCTTGCT-GAAGGTAATATCCGATTCAGGTTTCAG--- 14085 ||||| |||| ||| | | | ||| ||| || ||||| ||| || ||| | Sbjct 998 ATGGTGCGCACGGCCGCGCTGT-CGGGCTCGAACGTGATATCGCTTTCGGGCTTCGGATC 1056 Query 14086 ---CGCCTTCTCGGCCACCACATCGGCGTTATTGGTAAACACTTCTTCACGGACATATTC 14142 || ||||| ||||| | ||||| ||||| || | ||| || || | || Sbjct 1057 GGCCGGATTCTCAGCCACGGGGGCAGCGTTGTTGGTGAAGCCCGTTTCGCGCACGAACTC 1116 Query 14143 CAGGGAGTTACTGGAAATGCGGCCCTGCGCCAGCAGATCACGAATGGTCAGACGGCGCAG 14202 | || || |||| |||||||| |||||||||||| | | || ||||| | Sbjct 1117 AATGGCATTGCTGGCCGTGCGGCCCCAGAACAGCAGATCACGCACGAACA---GGCGCTG 1173 Query 14203 GCCCGGC 14209 | ||||| Sbjct 1174 GTCCGGC 1180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124664166314532