Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq25614 86.0 5e-12 >seq25614 Length=477 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| |||||||||||| |||| || || || ||||| ||| || || Sbjct 270 ATGCAAATCTTTGTAAAAACACTAACTGGAAAGACAATTACATTGGAAGTTGAGAGCTCG 211 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | | ||||| || ||| ||||| || ||| | ||| || || Sbjct 210 GACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCTGACCAG 151 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| |||||||| || || || || |||| ||| | || |||| ||||| || Sbjct 150 CAGAGGCTTATCTTCGCTGGTAAGCAGCTGGAGGATGGCAGGACCTTGGCTGATTACAAT 91 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||||||| ||||| || ||||| |||| | | || ||||||| || Sbjct 90 ATTCAAAAGGAATCGACCCTGCATTTGGTGCTTCGTCTAAGAGGAGGCAT 41 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425220543754281