Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_020079.1 Length=147737 Score E Sequences producing significant alignments: (Bits) Value seq3270 134 1e-26 seq5793 98.7 9e-16 >seq3270 Length=3926 Score = 134 bits (148), Expect = 1e-26 Identities = 514/793 (65%), Gaps = 23/793 (3%) Strand=Plus/Minus Query 38620 CCACCCTTTTTTGAAAGCAATTTCTTCCAAGCACGCAATCTTCAATCCTTGACAGTTCTC 38679 ||| |||| || || ||||||||||| | || |||| || | ||||| | || || Sbjct 1800 CCAACCTTGGTTAAAGGCAATTTCTTCTAGACATGCAACTTTATAACCTTGTCGTTTTTC 1741 Query 38680 AATAGTCTGCACGAATTGACCAGCTTCCATCAGACTGGCGTGTGTTCCTGTGTCAAGCCA 38739 | || | || ||||| | ||||| | || || | || ||||| || | ||| Sbjct 1740 TAATGTTTCAACAAATTGTGCTGCTTCTAACAAGCTACTATTAGTACCTGTATCTAACCA 1681 Query 38740 AGTAAATCCTCGTCCGAGAACTTCCACTTGTAACTTCCTGTCTTCTAGGTAGCTGCGATT 38799 | ||| || || || || | ||| || | ||| | | | |||| || | |||| Sbjct 1680 TGCAAAACCACGCCCAAGCAATTCAACATTTAAATCACCGCGCTCTAAATACATTTGATT 1621 Query 38800 GATATCAGTGATCTCCAGTTCTCCACGCGCGGAAGGGGTTACTTCTAATGCACGTTGAAT 38859 | || || || | ||| || || | ||||| |||||| | |||| |||||| Sbjct 1620 TACTGTGGTAATTTCTAATTCCCCCCGATCAGAAGGTTTTACTTTTTTTGCAATTTGAAT 1561 Query 38860 AACAGAGTTATCATAGAAATACAAACCTGTGACAGCATAATCTGATTTAGGATTTTCAGG 38919 ||| || ||||| ||||||| |||||| || ||| ||| |||||||| || | || Sbjct 1560 CACATCATTGTCATAAAAATACAGACCTGTTACTGCAAAATTAGATTTAGGTTTGTTTGG 1501 Query 38920 TTTCTCTTCAATAGAAATAGCTTGACGATTACTCC-CAAATTCAACCACACCGAATCGTT 38978 ||| || || | ||| | || || | | || |||| ||||| ||||| ||||||| Sbjct 1500 TTTTTCCTCCAGAGATACTGCCCGATG-TCGTTCATCAAACTCAACAACACCAAATCGTT 1442 Query 38979 CAGGATCTTTCACCAAATACCCGAAAATACAAGCTCCGCCCCAAACATCTAC--CATCTC 39036 |||||||||| || || || ||| || | | | || | || ||| || || Sbjct 1441 CAGGATCTTTTACTTGGTAACC--AAACAC-TGTTGCCCCTCGCTCACGTACAACAGCT- 1386 Query 39037 ACTGGCGTTAATCA--GTAGTTTACCAAAGCTTTGTCCGAAGAATAGGTTGTCACCTAAA 39094 || ||| | || | ||| ||||| ||| || | || | || ||||| | Sbjct 1385 --TGACGT--AGCATGGGAGT-----AAAGCCTTGACCATAAAAAATATTATCACCAAGT 1335 Query 39095 ATAAGAGCAACA-GAGTCTTCTCCGATAAAATCTTTACCTATGATGAAAGCTTCCGC-AA 39152 | | | |||| | | || ||| ||||| |||| ||| || ||||| |||| ||| || Sbjct 1334 ACTAAACAAACATTACTATT-TCCAATAAACTCTTCACCAATAATGAATGCTTGCGCTAA 1276 Query 39153 GACCTCGTGGCTCGGATTGGATTGCGTAAGTGAGTTTTATCCCAAACATAGACCCATCTC 39212 | || | || || ||| ||||| || | | ||||||||| || |||| | Sbjct 1275 TCCATCTGGACTTGG-TTGTATTGCATATTGCAAGTGAATCCCAAACTGCGAACCATTGC 1217 Query 39213 CGAGAAGATACTCAAAGTCTTCCTGATCACCTGGTGTGGTGATGATTAAAATATCCTTAA 39272 | | ||| |||||| |||| ||| | ||||| || || || | |||||| |||| Sbjct 1216 CCAAAAGGCGCTCAAAACTATCCTTATCTTCGGGTGTCGTAATAATAAGAATATCTTTAA 1157 Query 39273 TGTCAGCCAACATCAATACCGATAAAGGGTAGTAGATCATGGGTTTGTCATACACAGGGA 39332 | |||| ||||| | || || | || || || ||||| || || ||||| | ||| | Sbjct 1156 TACCAGCTAACATAAGCACTGAAAGTGGATAATAAATCATTGGCTTATCATAAATAGGAA 1097 Query 39333 GCAATTGCTTGCTCACACTGCGTGTTACCGGATGAAGGCGGGTTCCACTTCCTCCCGCCA 39392 ||| ||| || || | ||| | || | | || ||||| || ||||| | Sbjct 1096 GCAGTTGTTTCGATACTCCTTTTGTGATGGGGTACAATCGCGTTCCTGAACCACCCGCTA 1037 Query 39393 AAATAATACCTTT 39405 ||||||||||||| Sbjct 1036 AAATAATACCTTT 1024 >seq5793 Length=2403 Score = 98.7 bits (108), Expect = 9e-16 Identities = 509/793 (64%), Gaps = 28/793 (4%) Strand=Plus/Minus Query 38624 CCTTTTTTGAAAGCAATTTCTTCCAAGCACGCAATCTTCAATCCTTGACAGTTCTCAATA 38683 || ||| |||||||||| ||||| | ||| | || || || ||||| | || |||||| Sbjct 2378 CCGTTTCTGAAAGCAATCTCTTCAATGCATCCGATTTTAAAACCTTGCCTTTTTTCAATA 2319 Query 38684 GTCTGCACGAATTGACCAGCTTCCATCA--GACTGGCGTGTGTTCCTGTGTCAAGCCAAG 38741 || |||| ||| || ||| || | || |||||||| || ||||| | Sbjct 2318 ACGCTTACAAATTCTGAAGCATCATTCAACGAAT--CGAAAGTTCCTGTATCCAGCCAGG 2261 Query 38742 TAAATCCTCGTCCGAGAACTTCCACTTGTAACTT-CCTGTCTTCTAGGTAGCTGCGATTG 38800 |||||| ||||||| | |||| | ||| ||| | || || ||| || Sbjct 2260 CTGTTCCTCGGTCGAGAACACCAACTTCCAGCTTTCCTTTGTT-TAAATAGACATTGTTT 2202 Query 38801 ATATCAGTGATCTCCAGTTCTCCACGCGCGGAAGG--GGTTACTTCTAATGCACGTTGAA 38858 | ||| || || ||||| || || | | ||||| | | || || || || | Sbjct 2201 ACATCGGTAATTTCCAGCTCACCTCTTGGTGAAGGCTGAATGTTTTTA--GCGATTTCTA 2144 Query 38859 TAACAGAGTTATCATAGAAATACAAACCTGTGACAGCATAATCTGATTTAGGATTTTCAG 38918 ||| ||||||||| |||||||| || | || ||||| | ||||| || | | ||| Sbjct 2143 CAACTTCGTTATCATAAAAATACAATCCCGGAACTGCATAGTTCGATTTTGGCTGTACAG 2084 Query 38919 GTTTCTCTTCAATAGAAATAGCTTGACGATTACTCCCAAATTCAACCACACCGAATCGTT 38978 |||| ||||||||||||| ||||| |||| ||||||| || ||||| ||| | Sbjct 2083 GTTTTTCTTCAATAGAAACAGCTTTGAAATTATCGTCAAATTCTACAACACCATATCTCT 2024 Query 38979 CAGGATCTTTCACCAAATACCCGAAAATACAAGCTCCGCCCCAAACATCTACCATCTCAC 39038 | |||||| || ||| | |||| ||| ||||||| ||| | || | Sbjct 2023 CGGGATCTGAAACGTGATAAGCAAAAA--CAA-CTCCGCC------ATC-AGGATTGGTC 1974 Query 39039 TGGCGTTAATCAGTAGT-TTACCAAAGCTTTGTCCGAAGAATAGGTTGTCACCTAAAATA 39097 | | || ||| || || ||| | | || |||| | || || || |||| Sbjct 1973 TTGTTTT--TCAATAAAGTTCCCATTTCGGAG-CCATAGAAAATATTATCTCCCAAAACG 1917 Query 39098 AGAGCAACAGAGTCTTCTCCGATAAAATCTTTACCTATGATGAAAGCTTCCGCAAGACC- 39156 || || | | || | ||||||||| | || ||| | ||||||||| | || | || Sbjct 1916 AGTGCTGCCGCATCGTTTCCGATAAACTGTTCACCCAGGATGAAAGCCTGTGCTAATCCG 1857 Query 39157 TCGTGGCTCGGATTGGATTGCGTAAGTGAGTTTTATC-CCAAACATAGACCCATCTCCGA 39215 || | || || | | | |||| | | | ||| || | | || |||||||| | Sbjct 1856 TCCGGACTTGGCT-GTACCACGTAC-TCAATATTACAACCGATCTGTGAGCCATCTCCCA 1799 Query 39216 GAAGATACTCAAAGTCTTCCTGATCACCTGGTGTGGTGATGATTAAAATATCCTTAATGT 39275 ||| | || | | ||||| || ||||| ||||| | |||||| ||||| Sbjct 1798 AAAGTTTGATGAATCCGGCTTGATCGTGCGGAGTGGTAATGATCAGAATATCTTTAATTC 1739 Query 39276 CAGCCAACATCAATACCGATAAAGGGTAGTAGATCATGGGTTTGTCATACACAGGGAGCA 39335 | ||||| | |||| || | || || |||||||| || |||||||| ||||| | | Sbjct 1738 CTGCCAAAAGCAATGTTGAAAGCGGATAATAGATCATCGGCTTGTCATAAACAGGCATTA 1679 Query 39336 ATTGCTTGCTCACACTGCGTGTTACCGGATGAAGGCGGGTTCCACTTCCTCCCGCCAAAA 39395 |||||||||| ||| | || | || | ||| | ||||| ||||| || || | Sbjct 1678 ATTGCTTGCTTACAGCGATGGTAAGAGGGTAAAGTCTTGTTCCGGAGCCTCCGGCTAATA 1619 Query 39396 TAATACCTTTCAT 39408 | || |||||||| Sbjct 1618 TTATTCCTTTCAT 1606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472420439852680