Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_020158.1 Length=102319 Score E Sequences producing significant alignments: (Bits) Value seq23554 84.2 1e-11 >seq23554 Length=542 Score = 84.2 bits (92), Expect = 1e-11 Identities = 171/254 (67%), Gaps = 0/254 (0%) Strand=Plus/Minus Query 35071 GATGCCGCGGCACGACATACACTCGTGCTCCGCGCGGACGAACACCACGACTGCCTGCGG 35130 || ||||||| || ||| |||| ||| || ||| || | | | | || ||||||| Sbjct 363 GACGCCGCGGGTCGTCATGCACTGGTGTTCGGCGTCGATCAGAATCGCCACGCCCTGCGG 304 Query 35131 TTCGAGTTCTTCGTGGATGGCGTCTGCGATTTGGTTCGTCAGGCGCTCCTGCACCTGCGG 35190 | || | | ||||||||| ||||| ||||| ||||| |||||| ||| | Sbjct 303 CGCCAGGCTTGATTCGATGGCGTCGGCGATCTGGTTGGTCAGCACTTCCTGCGTTTGCAG 244 Query 35191 GCGACGAGCGTATCCCCGCACGACTCGCGCCAGTTTCGACAGGCCCACGACTTCCTCGTC 35250 || || | || |||||| || ||||| ||||| | ||| || || | ||||| Sbjct 243 ACGGCGCGAATAGATTTCCACGACCCGGGCCAGCTTCGAGATGCCGACCACCTTCTCGTT 184 Query 35251 CGGGATATACCCGACGTGAGCGCGTCCTCGGAACGGGAGGAAGTGGTGCGCACACATGCT 35310 |||||| || |||| | || || |||||||| | ||| ||| |||| ||| Sbjct 183 CGGGATGTAGGCGACATAGGCCTTGCCCAGGAACGGGGCCATGTGATGCTCACAGTGGCT 124 Query 35311 CTCCACCTGGATGT 35324 |||||||| ||||| Sbjct 123 CTCCACCTCGATGT 110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 327154237772120