Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_020205.1 Length=42963 Score E Sequences producing significant alignments: (Bits) Value seq258 600 3e-167 seq6074 158 3e-34 seq23194 141 3e-29 >seq258 Length=21191 Score = 600 bits (664), Expect = 3e-167 Identities = 1013/1450 (70%), Gaps = 35/1450 (2%) Strand=Plus/Minus Query 31300 GGAACGCTCGCATGAAAAC-CGAAATCACCCCGTTCAACGTGA------CGCGTACCGTG 31352 ||||| |||||||||| | | ||| || |||| ||| ||| ||| | ||||| Sbjct 14162 GGAACCCTCGCATGAACGCTCCAAACAACATCGTTGAAC-TGAACATTCCGCATGCCGTG 14104 Query 31353 GCCGGGCGGTTCAAGATCCACGCGCTTCGCCTCGATGTAGATGGGAACGAAATTCCCGGA 31412 ||||| || ||||||||| | ||| | |||| | | | || |||| || | || Sbjct 14103 GCCGGCCGCTTCAAGATCGAGGCGTTCAAGGTCGACGCACACGGAGACGAGATCCATGGC 14044 Query 31413 AGCCGCCGGCTTGCTGCCGACTGGTTCGACAACCTGGTGGTGAACGCTGGGCTGGACCGC 31472 ||||| || ||||||||||||||||| ||| | | || || || || || || ||| Sbjct 14043 TCGCGCCGACTGGCTGCCGACTGGTTCGAGAACAAGATTGTCAATGCCGGCCTAGATCGC 13984 Query 31473 ATGGGCCAGGCGAGCGATTACCTTTCGGCTTGCATGGTGGGTTCCGGCAGCACGGCGCCC 31532 |||||| ||||| ||||| | ||||| ||||| || |||||| | || || Sbjct 13983 ATGGGCAGCAATAGCGACTACCTCAGCACCTGCATTGTGGGCTCTGGCAGCGCCGCCCCA 13924 Query 31533 GCTGTCGGCGACACGCAGCTGCAGTCCCGCATCGCCAGCACCACCAGCATCCAGTCCGAT 31592 | || ||| ||||| |||||||| |||||| | |||||||| |||| ||| | || || Sbjct 13923 GATGACGGGGACACTCAGCTGCAATCCCGCGTAGCCAGCACGACCACGATCAACTCGGAC 13864 Query 31593 ACCAATGGCATGGTGGTTTCTCCGCGGTATGGCTGGCGGCGCAAAACGTTCCGTTTTGCG 31652 ||||| ||||||||||| || ||||| || || ||| |||||| |||||||| |||||| Sbjct 13863 ACCAACGGCATGGTGGTGTCCCCGCGCTACGGTTGGAAGCGCAAGACGTTCCGGTTTGCG 13804 Query 31653 GCTGGCGTCGCCGCCGGCAACCTTTCGGAAGTGGGTGTGGGTTGGTCCACTGTTTCGGTG 31712 || |||| || || |||||||| || || || || | || |||||| | | ||| Sbjct 13803 GCCGGCGCTGCAGCGGGCAACCTGTCCGAGGTTGGCATCGGCTGGTCCTCGACGGCAGTG 13744 Query 31713 TTCAGCCGCGCCCTGATTCTGGATGGCAGTGGCAACCCGACCACCATCACCGTGCTGGCC 31772 |||||||| || ||||| || || || |||| || |||||||||||||| |||||| | Sbjct 13743 TTCAGCCGAGCGCTGATCCTCGACGGTGGTGGAAATCCGACCACCATCACGGTGCTGAGC 13684 Query 31773 GACGAAGTGCTGGATGTCACCTATGAGCTTCGCGCCTACGTCAACGAATCGGATGTCACC 31832 ||||||||||| || || || || ||||| || |||||||| ||||| | || || | | Sbjct 13683 GACGAAGTGCTTGACGTGACTTACGAGCTGCGGGCCTACGTGAACGAGGCCGACGTTAGC 13624 Query 31833 TTCAATGTGGACATCAGCGGCGTGACCTATGCGTGCGTGCTGCGGCCGGCGAACATCGGC 31892 ||||| || | ||||| || || || |||||||| || |||| ||||||||||||||| Sbjct 13623 TTCAACGTTGTAATCAGTGGTGTCACGTATGCGTGTGTTTTGCGCCCGGCGAACATCGGC 13564 Query 31893 GGCAGCCAAGGGTTGCAGATCGGCGA--CCAGGTGACCATCAACACGTCGAATCGCGCAG 31950 |||| ||| || |||||| ||||||| ||| | || ||||| ||| |||| || || | Sbjct 13563 GGCAACCAGGGTTTGCAGCTCGGCGATGCCA--TCACTATCAATACGGCGAACCGTGCTG 13506 Query 31951 GCGGCGTGCGCACTACCGAATCCAGCACGCTGGGGTCTGTGACTTCCATGCCTAGCGGCA 32010 |||||||||| || || || | || || || ||||| ||||| ||||||| Sbjct 13505 CTGGCGTGCGCAGCACTGAGAGCAACGTTCTCGGCTCGGTGACCGGTATGCCCAGCGGCA 13446 Query 32011 CGCAGAGTTCCATGGGCTTCACGAACAACGCGTACGTGAATGGAACCTACTACAGGAATC 32070 |||||| || |||| | ||| ||| | | || || || || || | |||| | | | Sbjct 13445 CGCAGAACTCGATGGATTACACCAACGAGACCTATGTAAACGGTACGTTCTACCGCAGCC 13386 Query 32071 ACACGCTCACCGCGGGGTTGAACCTTTCGAATTTCTCCACCGGCATCGGCGCCGTCACCA 32130 | || || || ||||| ||||| | ||||| | || || || Sbjct 13385 ATGTCCTTACGGCTCAACTGAACAACAGCAATTTTGCTACCGGAGTAGGGGCTGTGGTGG 13326 Query 32131 TTTCCAACACTTTCAGCGACTTCCAGATTTCGTTCACCCCGAAGATCCCGAAGGATTCCA 32190 | || ||||| |||||||||||||| | ||||||||||||||||| |||||||| | | Sbjct 13325 TATCGAACACCTTCAGCGACTTCCAAACCTCGTTCACCCCGAAGATTCCGAAGGACGCGA 13266 Query 32191 CGAAGGTGCTGACGCTGCAGGCTCGCAGCACGTGGGCGCGCCATGTTCCGTAA---CAAC 32247 | ||||| |||||||| |||| |||||||| |||| |||||| || | | | || Sbjct 13265 CCAAGGTCCTGACGCTACAGGTGCGCAGCACCTGGGGGCGCCACACCCCATGATTCCCAC 13206 Query 32248 ----GCCCTTTCCACTGTGCCGGTCCCGTCTTCCTTCGTGGAGACGGT-GAGCCGGCGCA 32302 | ||| ||||| ||||| || | || ||| ||| ||| | || ||| Sbjct 13205 TGGAGGCCTCTCCACCACACCGGTGCCCGCGCCCGACGTCGAGCGGGTCAATTCGACGC- 13147 Query 32303 CGGTCCCGTTGATCGACTACGAAATGGGCGGCGTGAACGTGGCCGATGCCATCCAGGGCT 32362 | ||| ||||||||| ||| ||||| |||||| || ||| || ||||| Sbjct 13146 TGCAGCCGCTGATCGACTTCGAGATGGGTGGCGTGGCGCTGAACGACGCTTCGCAGGGGC 13087 Query 32363 TGAACGTCAAGCTGTGGAAGCTGGAATCGAACGGCGCGCAGATGCTGCTTTCGGCC-GAT 32421 || || ||||||||| || | | |||| | || | | | | || || Sbjct 13086 TGTGGGTGAAGCTGTGGCGCGTGCGCGTGGATGGCGACGTGGTG-TACCTGGGCCCGGAC 13028 Query 32422 GGCGTGCCGGCCATCGAAC--TGTTCAACCGCCCCAACGTGTCGCAGGTGGCGCTGGCCT 32479 ||| | | || | | | | ||||| ||| || | || |||||||||||||| Sbjct 13027 GGC--GGCAGCGAACAACCGGCGTTCATCCGGCCGGGAATCACGTCGGTGGCGCTGGCCT 12970 Query 32480 TCGATCAGAATATGCGCCCCCACGTGGCCTTCGTGCAGACTGGCGTGACGTGGCTGTGGT 32539 |||| ||||| |||| || | | || ||||||||| | ||| || |||||||||||| Sbjct 12969 TCGACCAGAACATGCAGCCGGCCATTGCGTTCGTGCAGTCGGGCCTGGCGTGGCTGTGGT 12910 Query 32540 GGTACGACAG--CCAGGCCGGCGCCATGGTGTTCAGCAGCTTCCCCGGTGCGCTGACGCC 32597 |||||||||| | |||| | ||||||||||| | ||||| || ||| | | || Sbjct 12909 GGTACGACAGTTCGGTGCCG--GGCATGGTGTTCACCTCATTCCCGGGAGCGATCAACCC 12852 Query 32598 GCGGCTGACCACGGACGAAAAGCGTCCGACGC--ACCTGGAAGATTCGGACGTGATCTTG 32655 ||| ||||| |||||| ||||| ||||| | ||| | | |||| |||||||| || Sbjct 12851 GCGCCTGACGCTGGACGACAAGCGGCCGACCCAGACCAGCA--ATTCCGACGTGATTCTG 12794 Query 32656 GCCTACGTGCGCAACAACAACCTGTATTTCCGCATGCAGCGTGATCGGTTCCTGACCGAA 32715 | |||| |||| | ||| || | |||| ||||||||| || | || |||||| Sbjct 12793 GGCTACTTGCGTGCGGGCTCCCTCTACTACCGCCAGCAGCGTGACCGCTACCAGACCGAG 12734 Query 32716 TACCTGTTGA 32725 |||||| ||| Sbjct 12733 TACCTGATGA 12724 >seq6074 Length=2299 Score = 158 bits (174), Expect = 3e-34 Identities = 221/309 (72%), Gaps = 11/309 (4%) Strand=Plus/Minus Query 34834 GCGGGCGTCCAGCATCTTCATCTGATCGCAGGCGATGTCGGTGGTGTAGTGCGTCACGCC 34893 |||| || ||||||||| ||| | |||| | ||||||||||| ||| | | |||||| Sbjct 2231 GCGGCCGCCCAGCATCTGCATTTCATCGGCGATGATGTCGGTGGAGTACTTCTCCACGCC 2172 Query 34894 TTCCTTTTCG---TACTTGCCGTAACGGATCATGCCCGCCACCGCGATCTTCGAACCCTT 34950 |||| || |||||| |||| || | |||| | || || | ||||| Sbjct 2171 GTCCTGGCCGGTGTACTTGTCGTAGCGCAGGCTGCCTTCGACGTAGACCGAGCTGCCCTT 2112 Query 34951 GCGCAAGTATTCGCCGGCAATCTCGGCCAGCTTCCCGAAGAACACCACCCGGTGCCACTG 35010 ||||| ||| |||||||| |||||| | ||||| |||||||||||||| |||||||| | Sbjct 2111 GCGCAGGTACTCGCCGGCGATCTCGCCGAGCTTGCCGAAGAACACCACGCGGTGCCATTC 2052 Query 35011 GGTTTCTTCGACCTGGTTGCCCTCGCGGTCTTTCCGCTTCGACG----TGGTGGCGATGG 35066 ||| || ||||||||| || ||| || || |||| ||||||| | | Sbjct 2051 GGTGCGCTCCTGCTGGTTGCCATCCTTGTCCTTGCG----GACGCTGGTGGTGGCCAGGC 1996 Query 35067 AAATGCGGGTGATGGCCATGCCGCCCTGCGTGTAAGTCACCTTCGGGTCATCCCCCAGGT 35126 ||||||||||| |||||||||||||| ||||| |||| | |||||| | || || | Sbjct 1995 TGATGCGGGTGATCGCCATGCCGCCCTGGGTGTACTTCACGTCCGGGTCGTTGCCGAGAT 1936 Query 35127 TCCCGATCA 35135 | |||| || Sbjct 1935 TGCCGACCA 1927 >seq23194 Length=554 Score = 141 bits (156), Expect = 3e-29 Identities = 197/274 (72%), Gaps = 9/274 (3%) Strand=Plus/Plus Query 34834 GCGGGCGTCCAGCATCTTCATCTGATCGCAGGCGATGTCGGTGGTGTAGTGCGTCACGCC 34893 |||| || | ||||||| ||||| ||| | ||||||||||| ||| | | | || Sbjct 3 GCGGCCGCCGAGCATCTGCATCTCGTCGGCGATGATGTCGGTGGAGTACTTCTCCTGACC 62 Query 34894 TTCCTTTTCG---TACTTGCCGTAACGGATCATGCCCGCCACCGCGATCTTCGAAC---C 34947 |||| || |||||| |||| ||||| |||| | || | | ||| | | Sbjct 63 GTCCTGGCCGGTGTACTTGTCGTAGCGGATGGAGCCCTCGAC---GTACACCGAGCTGCC 119 Query 34948 CTTGCGCAAGTATTCGCCGGCAATCTCGGCCAGCTTCCCGAAGAACACCACCCGGTGCCA 35007 |||||||| ||| |||||||| |||||| | ||||| |||||||||||||| |||||||| Sbjct 120 CTTGCGCAGGTACTCGCCGGCGATCTCGCCGAGCTTGCCGAAGAACACCACGCGGTGCCA 179 Query 35008 CTGGGTTTCTTCGACCTGGTTGCCCTCGCGGTCTTTCCGCTTCGACGTGGTGGCGATGGA 35067 | ||| ||| ||||||||| || ||| |||||| |||||||| | | Sbjct 180 TTCGGTGCGTTCCTGCTGGTTGCCGTCCTTGTCCTTCCGCACGCTGGTGGTGGCCAGGCT 239 Query 35068 AATGCGGGTGATGGCCATGCCGCCCTGCGTGTAA 35101 || |||||||| ||||||||||||||||| ||| Sbjct 240 GATCCGGGTGATCGCCATGCCGCCCTGCGTATAA 273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137302030560150