Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq35445 91.5 2e-13 seq6689 86.0 8e-12 seq16939 82.4 1e-10 >seq35445 Length=682 Score = 91.5 bits (100), Expect = 2e-13 Identities = 66/75 (88%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 74130 GTGGAGAATAGGAGACTCGAACTCCTGACATCCTGCTTGCAAAGCAGGCGCTCTA-CCAG 74188 |||||||||| | || |||||| | |||| |||||| ||||| |||||||||||| |||| Sbjct 432 GTGGAGAATAAGGGAGTCGAACCCTTGACCTCCTGCGTGCAAGGCAGGCGCTCTAGCCAG 373 Query 74189 CTGAGCTAATTCCCC 74203 ||||||||||||||| Sbjct 372 CTGAGCTAATTCCCC 358 >seq6689 Length=2121 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 108518 TGGGCGATGAGGGAATCGAACCCCCGACCCTCTCCGTGTAAAGGAGGTGCGCTACCGCTG 108577 |||| | |||||| ||||||||||||||||||||||||||||||| || ||||||||| Sbjct 2042 TGGGTGCTGAGGGTTTCGAACCCCCGACCCTCTCCGTGTAAAGGAGACGCTCTACCGCTG 1983 Query 108578 CGCTAATCGCCC 108589 ||||| | ||| Sbjct 1982 AGCTAAGCACCC 1971 >seq16939 Length=822 Score = 82.4 bits (90), Expect = 1e-10 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 108518 TGGGCGATGAGGGAATCGAACCCCCGACCCTCTCCGTGTAAAGGAGGTGCGCTACCGCTG 108577 |||| | |||||| |||||||||||||||||||||||||| |||| || ||||||||| Sbjct 678 TGGGTGCTGAGGGTTTCGAACCCCCGACCCTCTCCGTGTAAGGGAGACGCTCTACCGCTG 619 Query 108578 CGCTAATCGCCCTGG 108592 ||||| | ||| || Sbjct 618 AGCTAAGCACCCGGG 604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633232169502120