Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq1997 208 4e-49 seq451 145 4e-30 seq8079 104 1e-17 >seq1997 Length=5797 Score = 208 bits (230), Expect = 4e-49 Identities = 305/426 (72%), Gaps = 4/426 (1%) Strand=Plus/Plus Query 25933 CATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTT 25992 ||| || || || | | ||||||| ||| | |||||||| | ||| | |||||||||||| Sbjct 548 CATGAACAAGTCCGAAGTCCACATGGCAAAGAATAAATCACGCGCACGCATTTCTTCTTT 607 Query 25993 TCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATA 26052 ||| || || || || || || | ||||||||||||||| | |||||||| ||| | ||| Sbjct 608 TCCATGGTTTTTCTTCAGGTCAAGGAAATCAAAAATATCAGCGTGCCATGTTTCGATATA 667 Query 26053 GATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATT 26112 |||||||||||| ||||| | ||||||||| || || ||||| || | || || ||||| Sbjct 668 GATAGCAAAACTTCCTTTGCGTTTTCCTCCTCCCTGGTCTACATAACGAGCGGTATCATT 727 Query 26113 GAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGA 26172 |||||| |||||| ||||| | ||| |||| ||||||||| | | || | ||| Sbjct 728 GAAAACACGCAACATCGGAACAATTCCGTTTGACGTTCCGTTTGTTCCGCGGATATAGGA 787 Query 26173 TCCTGTCGATCTAATATCGTGAGCATG-AATACCGATTCCACCAGCCCATTTTGAAATAG 26231 || || | | || || || | || || |||||||| |||||| ||| |||||| Sbjct 788 ACCCGTGGCACGAACATTATG-GATTGAAAGCCCGATTCCTCCAGCCGATTGTGAAATTT 846 Query 26232 CTGCACAAT-CTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAAT 26290 || | || | | |||||| ||||||| | || || || | | |||| | | Sbjct 847 TGGCTGTTTGCTTTAGC-GTATCGTAAATTCCGTCGATACTGTCGTCCTGCATTGCCAGA 905 Query 26291 AAAAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCA 26350 | || || ||||| | ||||| | | ||||| | ||| ||||| || || || ||| Sbjct 906 AGGAAGCAGGAAGACATTTGCGGTTTTGGAGTTCCGGCATTGAATAACGTTGGCGTTGCA 965 Query 26351 TGAGTA 26356 || ||| Sbjct 966 TGCGTA 971 >seq451 Length=16219 Score = 145 bits (160), Expect = 4e-30 Identities = 322/474 (68%), Gaps = 12/474 (3%) Strand=Plus/Plus Query 25889 TTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGGA 25948 |||||||| || ||| ||| | |||| || ||| | ||| || | ||| | Sbjct 8786 TTTGGACAAAACAAACTCCACTTGCCATTACTTTCCACTCGTTTCATGAACAGATCAGAT 8845 Query 25949 ATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTT 26008 ||||| | || ||||| || || | ||||| ||| | |||||||| ||| Sbjct 8846 ATCCATAGAGCGTAAAACAAGTCACGCGCTCGGTGCAGTTCACTGCCGTGATTTTTTCGG 8905 Query 26009 AGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCT 26068 ||||| | ||| ||||| | |||| ||||||||||| || ||||| ||||| |||| Sbjct 8906 AGATCGAGGAACTCAAACACGTCTGCATGCCATGGTTCCAAGTAGATTGCAAAGGAACCT 8965 Query 26069 TTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATT 26128 || | ||| ||||||||||| || || || | || || || || || || |||||| Sbjct 8966 TTGCGTTTACCTCCACCTTGGTCCACATACCGAGCCGTGTCGTTAAACACGCGCAACATG 9025 Query 26129 GGAACTAATCCAGTT-GAAAATCCGTTTGTGCTATGAATCTTG--GATCCTGTCGATCTA 26185 || | | || | ||| ||| | ||||| || | | | || | | | || || | || Sbjct 9026 GGGA-TGATACCGTTGGAAGACCCGTTAGTACCACGGATGTAGCTGTTC--GTAGCTCGG 9082 Query 26186 ATATCGTGAGCATG--AATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAAT-CT 26242 |||| || ||||| || || || || || ||||| ||||| ||| ||||| | || Sbjct 9083 ATAT--TGTGCATGCTGATCCCAATACCTCCCGCCCACTTTGAGATACAAGCACATTGCT 9140 Query 26243 GAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAA 26302 || |||||| | ||||||| || |||| ||| ||| | | ||||||||| ||| Sbjct 9141 TCAA-TGTATCATAGATTCCTTCAATTGAATCATCTTGCATGGCAAGTAAAAAACACGAA 9199 Query 26303 GATAATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTA 26356 |||||||||| | | || || | |||||| || || || || ||||| ||| Sbjct 9200 GATAATTGCGGCCGTGGAGTGCCAGCATTAAACAACGTGGGCGTCGCATGGGTA 9253 >seq8079 Length=1786 Score = 104 bits (114), Expect = 1e-17 Identities = 291/438 (66%), Gaps = 14/438 (3%) Strand=Plus/Minus Query 24683 ACTGCTGGTTTAGTTCTAAGATAATACATTCCAGTTTTCAATTTCTTCTTCCAACCGTAA 24742 ||||| | || ||||| ||||| |||||||| ||||| ||| || ||| | || Sbjct 688 ACTGCCGACTTGGTTCTCAGATAGTACATTCCTGTTTTTAATCCGGACTGCCATGCATAG 629 Query 24743 AAATGCATTGATGTTAGTTTTGCAATGTTTGCTGATTCTAAA--AACAAGTTCATCGATT 24800 || |||||||| || ||||| |||| || || || || | |||| ||| | ||| | Sbjct 628 AAGTGCATTGAAGTCAGTTTGGCAAAATTCGC--ATCCTGCATGAACAGGTTTAACGACT 571 Query 24801 GAGCTTGGCAAACAAAACGTTGTCTATCTGCAGCTAAGTCAATGATCGTTTTCATCGATA 24860 | | ||| || |||| ||| | | | || ||||| |||||| || | Sbjct 570 GTGACTGGTCAATAAAATAACCTCTTTGGCGTGACATATCGATGATGTCTTTCATTGACA 511 Query 24861 TATCGTAAGCTGTTTTGTATCTCTCTTTTATCTCAGTTGGAATACTTGCAATATTTTGAA 24920 | || || | ||||| ||| ||||| | || ||||| | |||| ||||| | Sbjct 510 TTTCCCAAACGGTTTTATATAGTTCTTTCAAATCCTGCGGAATGATATCAATGTTTTGGA 451 Query 24921 CTGATCCATTTTCTCTCAATAGATTCAATCTCA--TATTCGGTGTCCAAAGATTAATTTT 24978 ||| || || | | || | | | | ||| | ||| | ||||||| | || Sbjct 450 TTGACCCGTTATGACGCATGATTTCCTGTTTCAGGTCTTCATT--CCAAAGACCCAATTC 393 Query 24979 TTCAAGATCT-CTAATCAAGTGTTTATTTATGATAATAAATTCTCCAGACAAAACTCTTC 25037 | | | |||| |||| |||||| || |||| | ||||||||||| || | |||| || Sbjct 392 TACTAAATCTTCTAA-CAAGTGCTTGTTTACCACGATAAATTCTCCTGAAAGCACTCGTC 334 Query 25038 TT--ATTGATAAGTTTGAAGTGAATGGTTCAAAACATTCATTATTTCCTAAGATTTGAGA 25095 || || |||| |||||||| | || |||||| ||| || ||||| | || ||||| Sbjct 333 TTGTATAGATA--TTTGAAGTATAAGGCTCAAAAGCTTCGTTGTTTCCAAGAATCTGAGA 276 Query 25096 AGTAGATGCTGTTGGCAT 25113 ||||| ||||||||||| Sbjct 275 TGTAGAAGCTGTTGGCAT 258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252930400389425