Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_020844.1 Length=40695 Score E Sequences producing significant alignments: (Bits) Value seq12370 161 3e-35 >seq12370 Length=1162 Score = 161 bits (178), Expect = 3e-35 Identities = 137/169 (81%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 2428 GACTTGGACAGCAGGAAGATGTACTCGTGCGCCTTTGTGCAGCGGTCGCGCACGCTCTCC 2487 ||||| ||||||||||| | || |||||||| ||| ||||| || ||||||||| |||| Sbjct 561 GACTTCGACAGCAGGAACAGGTGCTCGTGCGACTTCGTGCATCGATCGCGCACGGACTCC 502 Query 2488 GGCATTGGGTTTGGCTTGTGCCAGATAATATCCTGACGCAGGTACCAGCCGTCGGCTTGC 2547 ||||| ||||| |||||| |||||| || |||||||||||||||||||| || || | Sbjct 501 GGCATGGGGTTCGGCTTGGACCAGATGATGTCCTGACGCAGGTACCAGCCATCCGCACGT 442 Query 2548 AGGGCGAACGCTACGCGCCAGGGGATGCCGATAAGGTCTTTTGCTTTCA 2596 || ||||| || || ||| ||||||||||| ||||| || | ||||| Sbjct 441 AGCGCGAAGGCCACCATCCACGGGATGCCGATCAGGTCCTTCGGTTTCA 393 Score = 127 bits (140), Expect = 5e-25 Identities = 132/173 (76%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 2707 GCATAGCTGTCCCCAAGATTCAACCAAACTGTCCCGTCGTCACGCAGCACCCTGCGCACC 2766 || |||||||| || || |||| ||| || || ||||| || ||||| || | ||| ||| Sbjct 174 GCGTAGCTGTCGCCGAGGTTCAGCCACACGGTGCCGTCATCCCGCAGGACGCGGCGAACC 115 Query 2767 TCGCGGAACACGCGCACCAGCGCTTCCACGAACTCATCCGGTGACGCTTCAAGGCCGAGC 2826 || |||||||| ||||||| || || ||||| || || || || | || || |||| | Sbjct 114 TCCCGGAACACCTGCACCAGGGCGTCGACGAATTCCTCTGGCGATGGCTCCAGCCCGATC 55 Query 2827 TGGCCGTATTGCCCGTAGTCGCGCAGGCCGAAGTACGGCGGGGATGTGACGCA 2879 || || | ||||||||||| |||||||| |||||||| || |||||||| Sbjct 54 TGTCCATCGACGCCGTAGTCGCGGAGGCCGAAATACGGCGGCGACGTGACGCA 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130047493453326