Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq7396 205 1e-47 seq10067 141 1e-28 seq3491 82.4 9e-11 >seq7396 Length=1930 Score = 205 bits (226), Expect = 1e-47 Identities = 461/676 (68%), Gaps = 24/676 (4%) Strand=Plus/Plus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 || ||||| || || | ||||| || ||||||||||||||||| ||||| |||||||| Sbjct 937 ACTCCAATCGGCCCCATACCAGGTCCGCCACCTCCATGTGGAATGCAGAAAGTCTTATGA 996 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCA 138302 | ||| || ||||| ||||| || ||| | || ||| ||| || || ||||||||| Sbjct 997 AGATTAAGGTGACAAACATCAGCTCCAATATAACCTGGACTTGTCAGCCCCACCTGTGCA 1056 Query 138303 TTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACATAT- 138361 || | ||||| ||||| | || ||||| || ||||| ||||| | |||||| ||||| Sbjct 1057 TTCATGTTTGCCCCATCCATGTAAACCTGGCCCCCATTTTCATGGATGATCTTGCATATG 1116 Query 138362 CTGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAATACATGA 138421 | || || ||| | |||||||| || || ||||| || | ||||| ||| Sbjct 1117 GTATC-AATACCCTCCTCATACACACCATGGGTTGAAGGATAGGTCACCATAAGTGCTGA 1175 Query 138422 GAG----TTCAAATGTAT-TCATGATTGCTTTCTTCTCTAGATCTTTGATGTCTATGTTG 138476 || | | || || ||| || |||||||| ||| || | ||||| || || Sbjct 1176 AAGGTTTTCCTTGTGCATCTCA-GA-AGCTTTCTT---TAGTTCCTCGATGTTAATATTT 1230 Query 138477 CCATCATCATCACACTTG---ACACCTACAACTTTCATTCCTGCCATGACTGCACTAGCA 138533 || | | |||| | || ||| |||| |||||| || ||| | ||||| ||| Sbjct 1231 CCTTTAGCATC---CGTGCCAACAGAAACAATTTTCATGCCACACATAGCAGCACTTGCA 1287 Query 138534 GGATTAGTTCCATGTGCTGACTCTGGTATCAGACATACATTTCTTTTATCATCTCCTGAT 138593 ||||| |||||||| || || | || || | ||| ||||| || | | |||||| | Sbjct 1288 GGATTCGTTCCATGAGCAGATACAGGAATAATACAGACATTCCTGTGCCCCTCTCCTCTT 1347 Query 138594 CCTTGATGATATGCTTGGATTGCTAACAGTCCTGCATACTCACCCTG-TGATCCTGCGTT 138652 |||||||||| || | || | | |||||| |||||||| ||||| || || || || Sbjct 1348 GCTTGATGATAAGCACGTATAACCATCAGTCCAGCATACTC-CCCTGCTGCACCAGCATT 1406 Query 138653 AGGTTGTAATGATATAGAATCAAAACCTGTGATATCACATA-ACCATTTCTGTAAGTCAT 138711 ||||| | || | |||||||| || || || ||||| | | | | || || || | Sbjct 1407 TGGTTGCAGAGAGAACGAATCAAACCCAGTAATGTCACAAAGAACCTCTC-CCAAATCTT 1465 Query 138712 CTATTATCTTTTGATAACCCATGGTCTGTATCAT-AGGTGTATGTGGATGCACGTTGGCA 138770 | |||| |||||| ||| || ||| | ||||| | || |||| || | | Sbjct 1466 TGAACATCTCCTGATAA-CCAGCAGCTTGATCTTGAGGTGCAAAAGGGTGCATGTCAGAA 1524 Query 138771 AATTCTTCCCATGACACAGGCATCAGTTCTGCTGCTGCATTTAGTTTCATTGTGCAACTA 138830 || | ||| | |||||||||| || | | |||||| | |||||| ||||| Sbjct 1525 AAACTTGGCCAAGTAACAGGCATCATCTCCACAGTTGCATTCAATTTCATAGTGCAGGAT 1584 Query 138831 CCAAGTGGAACCATAC 138846 || | ||||| ||||| Sbjct 1585 CCTAATGGAATCATAC 1600 Score = 98.7 bits (108), Expect = 1e-15 Identities = 78/94 (83%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 137832 TCTGTGGGTTCTACCATCATAGTTCCTAACACAGGCCACGATAGTGTAGGTGCATGAAAT 137891 ||||||||||| | ||||| ||| ||| ||| ||||| || | ||||||||||| ||| Sbjct 514 TCTGTGGGTTCAATCATCAAAGTGCCTGGCACCGGCCAGGACATGGTAGGTGCATGGAAT 573 Query 137892 CCATAGTCCATAAGTCTCTTTGCTATATCTTCTG 137925 |||||||| ||||||||||| || | |||||||| Sbjct 574 CCATAGTCTATAAGTCTCTTAGCAACATCTTCTG 607 >seq10067 Length=1425 Score = 141 bits (156), Expect = 1e-28 Identities = 188/259 (73%), Gaps = 4/259 (2%) Strand=Plus/Plus Query 139263 CCATCTGCACCATGATATGCTGCATAGAATCCAGACATATTTGCGAGCAGTGCTTGTGCT 139322 || |||| ||||||||| |||| || | ||||||| ||||| |||| || ||||| Sbjct 115 CCTTCTGGACCATGATAGACTGCGTACATCGCAGACATGTTTGCTAGCAAGGCCTGTGCC 174 Query 139323 GTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGTAGTGCT 139382 |||||||| || ||||| || || |||| | |||||| ||||| | ||| || | || Sbjct 175 GTGCAGATATTGCTGGTGGCCTTATCTCGCCGAATATGTTGCTCCCGAGTCTGCATCGCC 234 Query 139383 AATCTGTATGCAGGATTGCC--TTCGCTGTCCACTGACTGACCTACAATTCTGCCAGGTA 139440 | ||| ||||| ||||| || | | |||| ||| |||| ||| || ||||| | Sbjct 235 ATTCTAAGAGCAGGCTTGCCATTTGAATCTACACTCACT--CCTATAATCCTACCAGGCA 292 Query 139441 TCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCTCCGTATCCCA 139500 | |||||||||||| | | || || | || || |||||||| ||||| ||||||| Sbjct 293 TGATTCTCTTATACTCTTGGGAAGTAGCCAGAAAAGCTGCATGAGGCCCTCCATATCCCA 352 Query 139501 TAGGAATACCAAACCTTTG 139519 | |||| |||||||| || Sbjct 353 TCGGAACCCCAAACCTCTG 371 >seq3491 Length=3714 Score = 82.4 bits (90), Expect = 9e-11 Identities = 165/242 (68%), Gaps = 2/242 (1%) Strand=Plus/Plus Query 138180 GCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTA 138239 || |||| ||| || ||||| ||||| ||||| ||||| || |||||| || || ||| Sbjct 712 GCAACACAAATTGGTCCTACCCCAGGTCCTCCGCCTCCGTGAGGAATAGCAAAGGTTTTA 771 Query 138240 TGTAAATTTAGATGACATACATCTGCACC-ATAGTCACATGGTTTTGCTAGACCTACCTG 138298 || | || || || || || || || || || || | || |||| | |||||||| Sbjct 772 TGCAGGTTCAGGTGGCAAACGTCCGCTCCGATTGTAGCC-GGATTTGTCAATCCTACCTG 830 Query 138299 TGCATTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACA 138358 |||||| | ||| ||||| || | || ||||| || || || || || | || || Sbjct 831 TGCATTCATATTGGCACCGTCCATGTAAACCTGTCCGCCGTTTTCGTGTATAATTTTTGT 890 Query 138359 TATCTGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAATACA 138418 || | | || | |||| | || || || || |||||||| || | ||| | ||| Sbjct 891 TACTTCAATAATAGAAGCTTCATAAACTCCGTGGGTTGATGGATAGGTCACCATCAAACA 950 Query 138419 TG 138420 || Sbjct 951 TG 952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578741187198280