Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq14849 96.9 5e-15 seq14573 96.9 5e-15 seq35445 89.7 7e-13 seq14778 89.7 7e-13 seq5180 89.7 7e-13 seq35467 87.8 2e-12 seq25200 86.0 8e-12 seq24155 86.0 8e-12 seq6460 86.0 8e-12 >seq14849 Length=952 Score = 96.9 bits (106), Expect = 5e-15 Identities = 67/75 (89%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 53741 TGGAGAATAACGGACTCGAACCGTTGACATCCTACTTGCAAAGCAGGCGCTCTA-CCAAC 53799 |||||||||||||| ||||||||||||| |||| | ||||| |||||||||||| ||| | Sbjct 405 TGGAGAATAACGGAGTCGAACCGTTGACCTCCTGCGTGCAAGGCAGGCGCTCTAGCCAGC 346 Query 53800 TGAGCTAATTCCCCA 53814 ||||||||| ||||| Sbjct 345 TGAGCTAATCCCCCA 331 >seq14573 Length=973 Score = 96.9 bits (106), Expect = 5e-15 Identities = 67/75 (89%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 53741 TGGAGAATAACGGACTCGAACCGTTGACATCCTACTTGCAAAGCAGGCGCTCTA-CCAAC 53799 |||||||||||||| ||||||||||||| |||| | ||||| |||||||||||| ||| | Sbjct 579 TGGAGAATAACGGAGTCGAACCGTTGACCTCCTGCGTGCAAGGCAGGCGCTCTAGCCAGC 638 Query 53800 TGAGCTAATTCCCCA 53814 ||||||||| ||||| Sbjct 639 TGAGCTAATCCCCCA 653 >seq35445 Length=682 Score = 89.7 bits (98), Expect = 7e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 53741 TGGAGAATAACGGACTCGAACCGTTGACATCCTACTTGCAAAGCAGGCGCTCTA-CCAAC 53799 |||||||||| ||| ||||||| ||||| |||| | ||||| |||||||||||| ||| | Sbjct 431 TGGAGAATAAGGGAGTCGAACCCTTGACCTCCTGCGTGCAAGGCAGGCGCTCTAGCCAGC 372 Query 53800 TGAGCTAATTCCCC 53813 |||||||||||||| Sbjct 371 TGAGCTAATTCCCC 358 >seq14778 Length=957 Score = 89.7 bits (98), Expect = 7e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 53741 TGGAGAATAACGGACTCGAACCGTTGACATCCTACTTGCAAAGCAGGCGCTCTA-CCAAC 53799 |||||||||||||| ||||||||||||| ||| | ||||| ||||| |||||| ||| | Sbjct 74 TGGAGAATAACGGATTCGAACCGTTGACCCCCTGCGTGCAAGGCAGGTGCTCTAGCCAGC 15 Query 53800 TGAGCTAATTCCCC 53813 |||||||||||||| Sbjct 14 TGAGCTAATTCCCC 1 >seq5180 Length=2659 Score = 89.7 bits (98), Expect = 7e-13 Identities = 73/88 (83%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 53484 GCGGAGAGGGTGAGATTCGAACTCACGGAGGCTTTCACC--TCGCTGGTTTTCAAGACCA 53541 |||||||| ||| ||||||||| |||||| | ||| ||| |||| ||||||||||||| Sbjct 956 GCGGAGAGAGTGGGATTCGAACCCACGGAAGGTTTGACCCTTCGCCGGTTTTCAAGACCG 1015 Query 53542 GAGCCATAAACCACTCGACCACCTCTCC 53569 | ||| |||||| |||| ||| |||||| Sbjct 1016 GTGCCTTAAACCGCTCGGCCATCTCTCC 1043 >seq35467 Length=503 Score = 87.8 bits (96), Expect = 2e-12 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 53750 ACGGACTCGAACCGTTGACATCCTACTTGCAAAGCAGGCGCTCTACCAACTGAGCTAATT 53809 ||||| |||||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct 119 ACGGATTCGAACCGACGACATCCTGCTTGCAAAGCAGGCGCTCTACCAACTGAGCTATGG 178 Query 53810 CCCCAATC 53817 ||||| || Sbjct 179 CCCCATTC 186 >seq25200 Length=489 Score = 86.0 bits (94), Expect = 8e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 53741 TGGAGAATAACGGACTCGAACCGTTGACATCCTACTTGCAAAGCAGGCGCTCTA-CCAAC 53799 ||||||||| |||| |||||||| |||| |||| | ||||| |||||||||||| ||| | Sbjct 146 TGGAGAATATCGGAGTCGAACCGATGACCTCCTGCGTGCAAGGCAGGCGCTCTAGCCAGC 205 Query 53800 TGAGCTAATTCCCC 53813 ||||||||| |||| Sbjct 206 TGAGCTAATCCCCC 219 >seq24155 Length=522 Score = 86.0 bits (94), Expect = 8e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 53741 TGGAGAATAACGGACTCGAACCGTTGACATCCTACTTGCAAAGCAGGCGCTCTA-CCAAC 53799 ||||||||| |||| |||||||| |||| |||| | ||||| |||||||||||| ||| | Sbjct 151 TGGAGAATATCGGAGTCGAACCGATGACCTCCTGCGTGCAAGGCAGGCGCTCTAGCCAGC 210 Query 53800 TGAGCTAATTCCCC 53813 ||||||||| |||| Sbjct 211 TGAGCTAATCCCCC 224 >seq6460 Length=2180 Score = 86.0 bits (94), Expect = 8e-12 Identities = 71/86 (83%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 53484 GCGGAGAGGGTGAGATTCGAACTCACGGAGGCTTTCACC--TCGCTGGTTTTCAAGACCA 53541 |||||||| ||| ||||||||| |||||| | ||| ||| |||| ||||||||||||| Sbjct 2095 GCGGAGAGAGTGGGATTCGAACCCACGGAAGGTTTAACCCTTCGCCGGTTTTCAAGACCG 2154 Query 53542 GAGCCATAAACCACTCGACCACCTCT 53567 | ||| |||||| |||| ||| |||| Sbjct 2155 GTGCCTTAAACCGCTCGGCCATCTCT 2180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665198762431480