Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq451 208 9e-49 seq195 154 2e-32 seq9529 140 4e-28 seq691 120 4e-22 seq9125 100 3e-16 >seq451 Length=16219 Score = 208 bits (230), Expect = 9e-49 Identities = 1187/1866 (64%), Gaps = 58/1866 (3%) Strand=Plus/Minus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGG 75187 ||||||| ||| | | ||||||||| | ||||| || |||| | || ||| || Sbjct 9432 CGGGACTTTGAGTACGATTACTTTGGGTTTAAAACACTGGAGAGAGGTTACCTTTTCCGC 9373 Query 75188 CTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATC 75247 | |||||| | | ||| || ||| | ||| | ||||| || || | || || Sbjct 9372 GTGAATGGCAAAGTGGTTGAACGACCCCAGCAAATGATTATGCGCGTTGCTCTTGGGATT 9313 Query 75248 CACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTC 75307 || | ||||| | | | || ||||| ||||| |||||| ||| | |||| Sbjct 9312 CATAAGAGCAACATTCAAGCAGCTTTAGAGACGTACGAATTGATGTCTCAA---AAGTTC 9256 Query 75308 ATT---CACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGT 75364 || || || || || || | || |||||||| || ||| | ||||| | || Sbjct 9255 TTTACCCATGCGACGCCCACGTTGTTTAATGCTGGCACTCCACGGCCGCAATTATCTTCG 9196 Query 75365 TGCTTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAG 75424 || || | | |||| | || || ||||| | || ||||||| || | | | | Sbjct 9195 TGTTTTTTACTTGCCATGCAAGATGATTCAATTGAAGGAATCTATGATACATTGAAGCAA 9136 Query 75425 TGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCC 75484 ||||| |||||||||||||| || ||||||||||| ||| || || | |||| Sbjct 9135 TGTGCTTGTATCTCAAAGTGGGCGGGAGGTATTGGGATCAGCATGCACAATATCCGAGCT 9076 Query 75485 AATAA-ATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCG 75543 | || | || || || || || || || || | ||||| || || ||| | || Sbjct 9075 ACGAACAGCTAC-ATCCGTGGTACTAACGGGTCTTCCAACGGTATCATCCCCATGTTGCG 9017 Query 75544 CGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCGGGGCGT---CGCAAGGGGTCCAT 75600 ||| ||||||| ||| || || ||||| | |||| || || ||||| || ||| | Sbjct 9016 CGTGTTTAACGACACGGCTCGGTATGTGGACCAAGGTGGAGGTAAACGCAAAGGTTCCTT 8957 Query 75601 CGCGGTCTACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAA 75660 || |||||||||||||||||||||| || | | |||||||| || | ||| || Sbjct 8956 TGCAATCTACTTGGAACCATGGCATGCAGACGTGTTTGAGTTCCTCGATCTCCGAAAAAA 8897 Query 75661 CCAAGGTGACGAAGAGGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCT 75720 || || ||| | || | || | |||| | || ||||| | || || Sbjct 8896 TCACGGCAGTGAACTGCACCGAGCGCGTGACTTGTTTTACGCTCTATGGATATCTGATCT 8837 Query 75721 TTTCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACC 75780 |||||||| || || || ||| | ||| | | || |||||| || | || || Sbjct 8836 GTTCATGAAACGAGTGGAAAGTAATGGCAAGTGGAGTTTGTTTTGTCCAAACGAAGCTCC 8777 Query 75781 AGGTCTCTCCGA-CGCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGG 75839 ||||||| ||| || | ||| || || ||||| |||||||| || |||||| ||| Sbjct 8776 TGGTCTCTACGAGTGCTG-GGGAGATGAATTTGAGACCCTCTACGAAACGTATGAGAAGG 8718 Query 75840 AGGGTAGAGC---CAATGCGACTGTACCAGCCGCCGATGTTTGGAAGGCTATTCTCAAAT 75896 |||| | || ||| ||| | | || || | || ||| || || | | Sbjct 8717 AGGGACGTGCTCGCAAGACGA-TCAATGCGCAGCAGTTG--TGGTTTGCCATCTTGGACG 8661 Query 75897 CACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTA 75956 |||||| ||||| || || | ||||||||||||||| || || ||| | Sbjct 8660 CACAGATTGAGACGGGGGTGCCCTTTATGCTTTACAAGGACGCGGCCAATCGTAAGTCCA 8601 Query 75957 ACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTT-TGCACGGAAATTTTAGAGTAC 76015 | || ||||| | || || ||| || | | ||| ||| || | | |||||| Sbjct 8600 ATCAGCAGAATCTTGGCACGATC-CGATCCAGTAACTTGTGCTGTGAGGTGATGGAGTAC 8542 Query 76016 ACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTC 76075 || | ||| ||| || || ||||| ||||| ||| | || || || |||| ||| Sbjct 8541 ACGTCTCCGGACGAGGTTGCGGTGTGCAACTTGGCGTCAGTGGCGCTGCCCAAGTTTGT- 8483 Query 76076 AATGAAGAGACTCGCACT-TTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTAC 76134 ||||| || | || | || || || | || | || ||| | || || Sbjct 8482 --GGAAGA----CGGTGTGTTCAACTACAAATTGCTGTACGACGTGACCAAGGTCGTCAC 8429 Query 76135 CAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGTTG-AGACTGCGCGAAAGT 76193 | || || ||| |||||||||| || | || || |||| ||| || ||||| | Sbjct 8428 CCGCAACCTCAACAAAGTCATTGACGTCAACTACTACCCGGTTGCAGA-AGCTCGAAAAT 8370 Query 76194 CTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTT 76253 | || ||||| || | || | || | |||||||||||||| || |||| ||| || Sbjct 8369 CCAACATGCGCCATCGTCCCGTGGGAATTGGTGTTCAAGGTCTGGCCGATGCTTTTCTTC 8310 Query 76254 TGTGCCGCTACGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAA 76313 | || || ||||| || || || || |||| |||||||| | Sbjct 8309 TCATGAACTTTGCGTTTGAAAGTGAAGAGGCTCGTGAACTGAACAAGAACATCTTTGAGA 8250 Query 76314 CCATGTATCACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATG 76373 |||| || |||| || ||||| | | || | || | | | ||| | || | Sbjct 8249 CCATCTACTACGCTTCGATGGAGACTTCTATGGAGATTGCCAAGGAACTGGGTCCGTACG 8190 Query 76374 AGACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTT-CAGTTTGATATGTGGGAAGGT 76432 |||| || |||| || || || ||||||| ||| || ||||| |||||| ||| Sbjct 8189 AGACGTTCCAGGGCTCCCCTGC-CAGCAAGGGGATCTTCCAATTTGACATGTGG---GGT 8134 Query 76433 GAAACCAAG----CTCAAC--TACGACTGGGATGTTCTCAAG--GAACG-CATCAAGGAG 76483 | || | || | | |||||| | | ||| ||| | |||| || Sbjct 8133 GTCACTCCGTCGTCTGGTCTTTGGGACTGGACCGCCTTGAAGGAGAATGTGATCA---AG 8077 Query 76484 AAGGGTCTTCGTAACAGTCTTT--TGATGGCACCAATGCCAACAGCCTCCACCGCACAAA 76541 | ||| |||||||| ||||| | |||| || |||||||| || || || || || | Sbjct 8076 CACGGTATTCGTAAC--TCTTTGCTAGTGGCTCCTATGCCAACTGCTTCAACTGCCCAGA 8019 Query 76542 TCTTGGGTAATAATGAATGCTTTGAACCATACACAACAAACATCTACCTGAGAAGAACCC 76601 || |||| || ||||||| | | || || |||||| ||||||| ||| | | | Sbjct 8018 TCCTGGGCAACAATGAATCCATCGAGCCGTACACATCAAACATGTACAATCGTCGCGTAC 7959 Query 76602 TCGCAGGTGAGTTTGTCATTGTCAACAAGCACCTCGTCAATGACCTCAAGAAGATTGGTC 76661 |||| ||||||||| || ||||||||||| || | || || || | | | || Sbjct 7958 TCGCTGGTGAGTTTACGATCGTCAACAAGCATCTGATGAAGGAGCTGATTGATTTGGGCA 7899 Query 76662 TCTGGTCCAAGGATATGAAGGATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATCT 76721 ||||| | || | ||| || |||| | ||||| || | ||||| || Sbjct 7898 TCTGGACGCCTGAAGTCCGTAATCAAATCTTGAACGACGGTGGATCGGTGCAAAAGGTC- 7840 Query 76722 CAGA-TATCCCAGATGATATCAAGAATCTCTACCGCACAGTGTGGGAAATCAAGATGAAA 76780 ||| || ||||| |||||||| | ||| || ||||||||||||||| || Sbjct 7839 AAGACCATTCCAGACCATATCAAGGAAAAGTACAAGACCGTGTGGGAAATCAAGCAAAAG 7780 Query 76781 GATGTCATTGACATGGCCGCAGATCGTGGTCGCTT-CATTGATCAAAGTCAAAGTATGAA 76839 ||| | |||||| | || |||||||| ||||| |||| || |||||| | || Sbjct 7779 TCGGTCTTGGACATGTCGGCTGATCGTGG-CGCTTACATTTGCCAGAGTCAATCGCTCAA 7721 Query 76840 TCTATTCATGGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCATATGTACGCGTGGAA 76899 | | ||| | ||| ||||| || ||| | ||||||||| | || || ||||| Sbjct 7720 TATTCACATTGCCGATCCGACGATCAGTAAACTCACATCTATGCATTTCTATGCATGGAA 7661 Query 76900 ACAGGGGCTCAAAACCGGAATGTACTATCTCCGATCAAAGGCGAAAGCCCGAC-CAATTC 76958 | |||| ||||| || || ||||||||| | || | | | ||| ||||| | |||| Sbjct 7660 AAAGGGCCTCAAGACGGGCATGTACTATATGCG-CGGACGCCCAAAAGCCGACGCCATTC 7602 Query 76959 AGTTCA 76964 |||||| Sbjct 7601 AGTTCA 7596 >seq195 Length=24554 Score = 154 bits (170), Expect = 2e-32 Identities = 387/577 (67%), Gaps = 16/577 (3%) Strand=Plus/Plus Query 64948 ATTGACAAATACATTAAGGATGGATCTGAAAAGAAGCAGTTATT--TGAA-GCCATCCAA 65004 ||||||| ||||| ||||| | ||| | ||||| | | || || ||||| | Sbjct 23008 ATTGACACGTACATCAAGGACG---CTGTAGAGAAGGACCTTTTGCTGCGTGCCATTGAC 23064 Query 65005 ACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAA-GTC 65063 ||| | || ||| | ||||||| || |||||| | || |||| |||| | || Sbjct 23065 ACTATCCCGTGTGTGAAGAAGAAAGCCGCTTGGGCACTCAAGTGGTGTGACCCGCGTGTG 23124 Query 65064 TCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGG 65123 ||| || | ||| ||||| ||| ||||||| || | |||||||||||||||||||| || Sbjct 23125 TCG-TCATACGCAGAGCGTCTTCTTGCGTTCGCCTCAGTGGAGGGTATCTTCTTCTCTGG 23183 Query 65124 GTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTC 65183 || |||||| | || | ||| ||||||| || ||||||||||| || || |||| || Sbjct 23184 CTCCTTCTGCTCCATCTTCTGGCTGAAGAAACGTGGTCTCATGCCTGGTCTCAGCTTTTC 23243 Query 65184 AAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTG---GAGCTCTT 65240 ||||| ||||| || ||||||||| | || || |||||| || | | | Sbjct 23244 GAATGAGCTTATCAGTCGTGATGAGGGTATGCATACCGACTTTGCC-TGCCTCATGTACT 23302 Query 65241 CAAGACTTTGCGTAATAGACCCACTACCGAAAC-TATCCACGCCATCGTGAAAGAGGCGG 65299 | | || || |||| | | | || | | | |||| ||| | || |||| Sbjct 23303 CCAAAC--TGGTCAATA-AGCTGCCGGAGAGTCGTGTGCACGAGATCATTCGTGACGCGG 23359 Query 65300 TTGAGATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACT 65359 | | || ||| | | ||| | | ||| | ||||| | | |||||||| ||||||| Sbjct 23360 TGGCTATCGAGCACGAGTTTGTGTGTGACTCCCTCCCTGTTGAGCTCATCGGCATGAACT 23419 Query 65360 CTGAGAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGGG 65419 | | |||| | ||||||| |||| ||| | || ||||| || | | | |||| Sbjct 23420 CAACGCTCATGTGCCAGTACATCGAGTTCGTGGCTGACCGTCTGCTGTACTCATTGGGGG 23479 Query 65420 TGCCACCCATTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATG 65479 || | |||| ||| ||||| || || |||| ||||| | || ||| | | Sbjct 23480 TGTCTAAGATTTACCACGTCAAGAACCCGTTCGACTGGATGGACATGATCTCACTTCAGG 23539 Query 65480 GGAAGACCAACTTCTTTGAGAAGCGAGTTGGGGACTA 65516 | ||||||||||||||||||||||| || || || || Sbjct 23540 GCAAGACCAACTTCTTTGAGAAGCGTGTAGGTGAATA 23576 >seq9529 Length=1512 Score = 140 bits (154), Expect = 4e-28 Identities = 261/381 (69%), Gaps = 2/381 (1%) Strand=Plus/Plus Query 175300 CTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAA 175359 ||||| | |||| ||||| || || ||||| | || ||| ||||| || || ||| Sbjct 51 CTTCTGGTGGGTCCACCAGGGACTGGGAAGACTTTGCTAGCCAAGGCCATTGCAGGGGAA 110 Query 175360 TCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTG 175419 | ||| || ||| || ||| | | | ||||| ||||||||||||||| | Sbjct 111 GCTGGTGTACCTTTCTTCTCTATCTCAGGTTCTGAGTTTGTTGAGATGTTTGTTGGTATT 170 Query 175420 GGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTC 175479 || || || || || || || || ||| ||| |||||| || || ||||| Sbjct 171 GGAGCATCTAGAGTGCGTGACCTGTTCAAAAAGGCCAAGGAAAATGCCCCTTGCATTGTT 230 Query 175480 TTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCC-AGCAAA 175538 ||| | ||||| |||||||| || || | ||| | | |||| || | || ||| Sbjct 231 TTCGTGGATGAAATTGATGCAGTTGGTAGGCAGAGAGGAACTGGAA-TAGGTGGAGGAAA 289 Query 175539 TGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGA 175598 ||| ||| |||||||||| ||||||| || || ||||| |||||||||||||| | Sbjct 290 TGATGAGCGAGAACAAACCCTTAATCAGCTTCTTACCGAAATGGATGGCTTTGAAGGGAA 349 Query 175599 GACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCCT 175658 ||||| || | || ||||| || || || | | ||||| ||||||| || | | Sbjct 350 CACTGGTATCATTGTGATTGCTGCAACCAACAGGGCTGATATACTTGATGCTGCTTTGTT 409 Query 175659 TCGCCCGGGTCGTTTTGATCG 175679 |||||||| ||||||||||| Sbjct 410 GCGCCCGGGGCGTTTTGATCG 430 >seq691 Length=12351 Score = 120 bits (132), Expect = 4e-22 Identities = 242/354 (68%), Gaps = 4/354 (1%) Strand=Plus/Minus Query 14432 AAGGTGGCACAACTGGCGGCATATGTCGCGGACAAGTCTGCGTACCACCATGGTGAAGTA 14491 ||||| ||||||||||| | || || |||| | |||||||| || ||||| ||| | Sbjct 9499 AAGGTTGCACAACTGGCTGGCTACGTGTCGGAGCATTCTGCGTATCATCATGGCGAACAA 9440 Query 14492 TCCTTAGCGGACACGATTGTTAAGTTGGCAAACGACTACACGGGTTCAAACAACATTAAC 14551 ||| || | || || || ||||| | || | | || ||||||||| || Sbjct 9439 AGTTTACAGGGCTGTATCGTGAACATGGCACAGGATTTCGTCGGAAGCAACAACATTCAC 9380 Query 14552 CTTCTTGAACCGTGTGGTCAATTTGGTACGCGTCTCATGGGTGGTAAGGATGCTTCTCAG 14611 ||||| ||| || || |||||||||||| | ||||| || |||||||| | ||| Sbjct 9379 CTTCTGTCGCCGATCGGCCAGTTTGGTACGCGTTTAATGGGCGGCAAGGATGCAGC-CAG 9321 Query 14612 -ACGAGGTACATTTTCACAAAACT-TACCAAGGAGGCTCGCAAGATCTTTGATCCTCGGG 14669 | | ||||||||||| || || | ||| | || | || | ||||||| || Sbjct 9320 TGCTCGTTACATTTTCACGAATCTGGAACAA-CTCACGCGTAGAATTTACGATCCTCTGG 9262 Query 14670 ATGACCCGATCCTCAACTACTTGGACGATGATGGACGCTCCATTGAACCAGACTTTTACA 14729 | || || ||||| ||| |||| || ||||| | || || ||||| || | |||| Sbjct 9261 ACAACGATATTCTCAAGTACCTGGATGAAGATGGCCAGTCGATCGAACCTGAGTGGTACA 9202 Query 14730 TGCCAACTTTACCAATGGTTCTCGTGAATGGAACCGAGGGTATCGGTACGGGTT 14783 | || | | | || ||||| || || || || | ||| |||||||| ||||||| Sbjct 9201 TCCCGATTATTCCCATGGTGCTTGTCAACGGCAGCGACGGTATCGGGACGGGTT 9148 >seq9125 Length=1575 Score = 100 bits (110), Expect = 3e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 177772 CCTCGTCTCGGTGATTCGTGGTTGAAGAGGATTCCGGAGCAGGCATACATACCATAGGAT 177831 || || | ||| || ||||||||||||||||| ||| ||| || ||||| ||||||| | Sbjct 351 CCACGGCGCGGCGACTCGTGGTTGAAGAGGATGCCGTTGCACGCGTACATGCCATAGGCT 410 Query 177832 TCTCGGTAATTTTTGACGAGCCAGTGAGCGGCCAATTTGGAGACGCCATAGACGGATCGT 177891 || |||||||| | || ||||| ||| || ||||| ||| |||| || || Sbjct 411 TCGCGGTAATTGACGGTGATCCAGTAGGCGTACAGTTTGGCGACCGCATACGGCGAGCGC 470 Query 177892 GGGTAGAAGGGTGTCTCCTCAGTTTGTGGAGTTTCTCGGACTTTACCAAACATCTCCGAA 177951 ||||||||||| || || | ||||| ||||| | || || ||| |||||| Sbjct 471 GGGTAGAAGGGGGTGGTTTCCTTCTGTGGGGTTTCCTGCACCAGGCCGTACAGCTCCGAG 530 Query 177952 GTTGAGGCTTGGTATACACG 177971 || ||||| || || | ||| Sbjct 531 GTGGAGGCCTGATAGAAACG 550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596304581412320