Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq25200 91.5 2e-13 seq24155 91.5 2e-13 seq14849 89.7 6e-13 seq14573 89.7 6e-13 seq35467 87.8 2e-12 seq35445 86.0 7e-12 seq14778 86.0 7e-12 >seq25200 Length=489 Score = 91.5 bits (100), Expect = 2e-13 Identities = 66/75 (88%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 18008 CGGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGA 18066 ||||| |||||||||| ||| |||||||||||| ||||| |||||| |||| |||||||| Sbjct 220 CGGGGGATTAGCTCAGCTGGCTAGAGCGCCTGCCTTGCACGCAGGAGGTCATCGGTTCGA 161 Query 18067 GTCCGCTATTCTCCA 18081 |||| ||||||||| Sbjct 160 CTCCGATATTCTCCA 146 >seq24155 Length=522 Score = 91.5 bits (100), Expect = 2e-13 Identities = 66/75 (88%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 18008 CGGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGA 18066 ||||| |||||||||| ||| |||||||||||| ||||| |||||| |||| |||||||| Sbjct 225 CGGGGGATTAGCTCAGCTGGCTAGAGCGCCTGCCTTGCACGCAGGAGGTCATCGGTTCGA 166 Query 18067 GTCCGCTATTCTCCA 18081 |||| ||||||||| Sbjct 165 CTCCGATATTCTCCA 151 >seq14849 Length=952 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 18009 GGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAG 18067 |||| |||||||||| ||| |||||||||||| ||||| |||||| |||| |||||||| Sbjct 332 GGGGGATTAGCTCAGCTGGCTAGAGCGCCTGCCTTGCACGCAGGAGGTCAACGGTTCGAC 391 Query 18068 TCCGCTATTCTCCA 18081 |||| ||||||||| Sbjct 392 TCCGTTATTCTCCA 405 >seq14573 Length=973 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 18009 GGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAG 18067 |||| |||||||||| ||| |||||||||||| ||||| |||||| |||| |||||||| Sbjct 652 GGGGGATTAGCTCAGCTGGCTAGAGCGCCTGCCTTGCACGCAGGAGGTCAACGGTTCGAC 593 Query 18068 TCCGCTATTCTCCA 18081 |||| ||||||||| Sbjct 592 TCCGTTATTCTCCA 579 >seq35467 Length=503 Score = 87.8 bits (96), Expect = 2e-12 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 18016 TAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAGTCCG 18071 ||||||||||||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 175 TAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCGTCGGTTCGAATCCG 120 >seq35445 Length=682 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 18009 GGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAG 18067 ||||||||||||||| ||| |||||||||||| ||||| |||||| |||| ||||||| Sbjct 358 GGGGAATTAGCTCAGCTGGCTAGAGCGCCTGCCTTGCACGCAGGAGGTCAAGGGTTCGAC 417 Query 18068 TCCGCTATTCTCCA 18081 ||| ||||||||| Sbjct 418 TCCCTTATTCTCCA 431 >seq14778 Length=957 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 18009 GGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAG 18067 ||||||||||||||| ||| |||||| ||||| ||||| ||||| |||| |||||||| Sbjct 1 GGGGAATTAGCTCAGCTGGCTAGAGCACCTGCCTTGCACGCAGGGGGTCAACGGTTCGAA 60 Query 18068 TCCGCTATTCTCCA 18081 |||| ||||||||| Sbjct 61 TCCGTTATTCTCCA 74 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560998672591600