Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_020871.1 Length=133057 Score E Sequences producing significant alignments: (Bits) Value seq23727 120 3e-22 seq29118 102 7e-17 >seq23727 Length=536 Score = 120 bits (132), Expect = 3e-22 Identities = 303/461 (66%), Gaps = 0/461 (0%) Strand=Plus/Minus Query 89557 GAGAAATATGCGTTTGATTCCATTATCGGACTTTTAGCTACACTTGACTCACCCCAAACA 89616 ||||| |||| | || | || ||||| || | || || || || ||||| || || Sbjct 491 GAGAAGAATGCCTACGACGCGATCATCGGCCTGCTGGCCACGCTCGATTCACCGCAGACG 432 Query 89617 CGTTTTATTTATAATATCGCAGAGTATGTCAGTGATGCCTCTGTTCATGCTATTACAGCT 89676 || || || || || | || ||||| ||| ||| | | | ||||| | | || Sbjct 431 CGCTTCATCTACAACGTGGCCGAGTACATCACCGATCCGGCCGCGCATGCCAACGCCGCG 372 Query 89677 ATCATTGCACAACAAGAGGCTATTCATAATGAGAGTTATTCTTATGTACTTGCTTCTATT 89736 ||||| | || || || | || || || ||||| || || || || || || || Sbjct 371 ATCATCGGCCAGCAGGAAGTGATCCACAACGAGAGCTACAGCTACGTGCTGGCCTCGATC 312 Query 89737 ACTAACTTACAAGAGCAGAATCGAGTATTTGAGGAAGCTAGAACACACCCTACGATTATT 89796 || || | | | ||||| || | || ||| || | || ||||| || || || Sbjct 311 ACCGACCTGCCGAACCAGAACCGCATTTTCGAGATCGCCCGTACCCACCCGACCATCATC 252 Query 89797 AAACGTAATGCACCTATTATGAAGTCTTATGACGATTTCATGAATAACAAAACACCTGAA 89856 || || || || || || ||| | ||||||||||||||| | || || | || Sbjct 251 AAGCGCAACGCGCCGATCATGGGTGCGTATGACGATTTCATGCGCGAGAAGACTGCCGAG 192 Query 89857 AATATGGTAAAAGCTTTAGTACAGTCATCTATCTTAGAGGGTATTAATTTCTACAGCGGT 89916 | || | | | || | ||||| || ||| | || || || || ||||| ||| Sbjct 191 ACGCTGCTCAGGTCGTTGATCCAGTCCTCGATCCTGGAAGGCATCAACTTCTATTCCGGC 132 Query 89917 TTTGCTTACTTCTATAACCTTGTTCGTCAAAACAAGATGACGGGAACAGGTAAAATCATT 89976 || || |||||||| ||||| || || || ||| ||||| || || || || ||||| Sbjct 131 TTCGCCTACTTCTACAACCTGGTGCGGCAGAACCGCATGACCGGCACCGGCAAGATCATC 72 Query 89977 AGCTTCATTAATCGTGATGAGTTAGCCCATTCGAAGTTTAT 90017 |||||||| || ||||||||| | |||||| | ||||| || Sbjct 71 AGCTTCATCAACCGTGATGAGCTGGCCCATACCAAGTTCAT 31 >seq29118 Length=380 Score = 102 bits (112), Expect = 7e-17 Identities = 171/245 (70%), Gaps = 2/245 (1%) Strand=Plus/Plus Query 90136 GAGGTACTACAGGGCATTGAAGGAATTGATGTGGAAGAGATGTTAGACTATGTAAAATAT 90195 || ||||| | ||||| || || || |||||||| || ||| ||| || || || Sbjct 131 GAAGTACTGGACGGCATCGACGGCATCGATGTGGAGGAAATGACGCGCTACGTGAAGTAC 190 Query 90196 CGTGCTAATAAAATGTTAGGGATGCTAGGTCTTCAACCAATGTATCAAGGTCAC-ACAGA 90254 || || || || ||| || ||||| || | | | |||| || | ||| || || Sbjct 191 CGCGCCAACAAGATGGCCGGCATGCTCGGCATCGAGCGCCTGTA-CAGCGACACCACCGA 249 Query 90255 AAATTCTATGACATGGATTAAAGCTTACGCCGATAACTTTACAGAAACAAAAACCGACTT 90314 || ||| | ||||| || || ||||| || ||||| || || || || |||||||| Sbjct 250 CAACGTGATGCCGTGGATCAAGGCCTACGCTGACAACTTCACCGAGACCAAGACCGACTT 309 Query 90315 TTTCGAAATGCGTAACTCTAGTTACAAGAAAACAAACTTAGACAATGGGTTCGATGACTT 90374 ||||| ||||| || | ||||||||||| || ||| | ||||| || ||||| ||| | Sbjct 310 CTTCGAGATGCGCAATGCAAGTTACAAGAAGACCAACGTCGACAACGGCTTCGACGACCT 369 Query 90375 ATGAG 90379 |||| Sbjct 370 CTGAG 374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425473234258622