Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_021190.1 Length=46150 Score E Sequences producing significant alignments: (Bits) Value seq33741 255 2e-63 seq956 107 6e-19 >seq33741 Length=260 Score = 255 bits (282), Expect = 2e-63 Identities = 207/251 (82%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 758 GCGGGTCTACTTTCGCTGTACCGACCTGAGCCGCAAACGGCGGTTGAATGGGCAGACGAT 817 ||||| || | |||||| | ||| || |||||||| || || ||||| |||||||||||| Sbjct 8 GCGGGACTCCGTTCGCTTTTCCGGCCCGAGCCGCAGACAGCTGTTGAGTGGGCAGACGAT 67 Query 818 AATTACTATCTCCCCAAAGAGTCGGCCTACCAGGAAGGGCGCTGGGAAACGTTGCCGTTT 877 || || || ||||| |||||||| || || |||||||||||||||||||| || || || Sbjct 68 AACTATTACCTCCCGAAAGAGTCTGCTTATCAGGAAGGGCGCTGGGAAACCTTACCCTTC 127 Query 878 CAACGCGCGATCATGAATGCGATGGGTAACGATTACATACGTGAGGTCAACGTTGTTAAG 937 || || |||||||||||||| ||||| ||||| || || ||||| || || || || || Sbjct 128 CAGCGTGCGATCATGAATGCCATGGGCAACGACTATATCCGTGAAGTAAATGTCGTGAAA 187 Query 938 TCTGCCCGTGTTGGCTATTCAAAAATGTTGCTGGGTGTTTATGCGTATTTTATTCAGCAC 997 ||||||||||||||||| ||||| ||| |||| || || ||||||||||| || ||||| Sbjct 188 TCTGCCCGTGTTGGCTACTCAAAGATGCTGCTCGGGGTGTATGCGTATTTCATCCAGCAT 247 Query 998 AAGCAGCGAAA 1008 ||||||||||| Sbjct 248 AAGCAGCGAAA 258 >seq956 Length=9855 Score = 107 bits (118), Expect = 6e-19 Identities = 337/513 (66%), Gaps = 13/513 (3%) Strand=Plus/Plus Query 28856 CCTTCCTCACCCTCGGTATTAACATGGTCGATGGCGGCATCCAGGCGCTCACGTCGA-GG 28914 ||||| | || ||||| || | |||| ||| ||| |||||||| || ||| || Sbjct 5091 CCTTCACCGCCATCGGTGTTCAGGTGGTGGATCGCGTTGTCCAGGCGTTCG-GTCTTCGG 5149 Query 28915 CCAGTATTTTGCTGCCTGCTTCACGACCGTCTTTAGGATCATCTGCTCTTCATCGGTGAC 28974 |||||| || || ||||||||||||||||| ||||| | |||||| | Sbjct 5150 CCAGTACTTGTAGGCACGCTTCACGACCGTCTTTTTCGCCATCTCGCCCCAATCGGTCAG 5209 Query 28975 CCATGGACACTTCTTGCTGTTGTCAGATTTGTACTTCTTCCATGCTTCAGACCGGTCACG 29034 ||| || || ||| ||| | |||| | | ||||||||| || |||||||| Sbjct 5210 CCACGGGCAGGACTT-CTGCTTCGAGATCCATGC--CTTCCATGCCGACGAGCGGTCACG 5266 Query 29035 GATGGAGTAGATGGCATCGATGCGCATCGTATGGGTAAGGTAATCACCATCGTCAGTTTT 29094 ||||| || ||| | || | ||| | | ||| ||||| || || ||| | || || Sbjct 5267 GATGGCGTTGATCTCCTCCACCGACATTGCGTCGGTCAGGTAGTCGCCGTCGGCGGTCTT 5326 Query 29095 TACCGTTACATACGCCCCTACAATGTCCCCGCGCTGCTCTTCAGTATCAAAGTCGTTGTA 29154 ||| || || | || |||| || || || | || | || || |||| Sbjct 5327 CACCACCACGTAGACGCCGACAACCTCGCCACGGTCCT-TCGAG-----AACGGGTTGCG 5380 Query 29155 GATGTGGATCGGCGGCTTATCGAGCCCCTCGCGGCGGAACTGGTCGTT-TCTTCGAACAA 29213 ||||||| ||||| ||| || | || | | ||| ||| |||||| || | || || Sbjct 5381 GATGTGGGTCGGCTGCTGGTCAATGCCGTTGAGGCCGAAGGTGTCGTTCTCGTAGACCAG 5440 Query 29214 TAGCCGACTGGCACCACTTAATGGCGCCAGACTGCTGCGCGATGTGCATCAGGCCCATGT 29273 | | ||| | |||| || | || || | ||| | | |||||||||||||| Sbjct 5441 CT-CGGCCTGACCCCACCGGATCGACCCGGAGTCGATCGCCAGATCCATCAGGCCCATGT 5499 Query 29274 AACTGATGTCGAGGCAAATAGCCCCTTTACGCGGAACCAGGTAAGCCAGCTTCTGAGCTG 29333 | |||||||||||||| || || | ||||| |||||||| ||| |||||| || | Sbjct 5500 AGCTGATGTCGAGGCAGATCTTGCCGTCGCGCGGCACCAGGTAGGCCTGCTTCTTCGCCG 5559 Query 29334 GGTTTAGCGAAATACCGATAGCCGCAACGTTGA 29366 |||| || || ||||| || || | ||||| Sbjct 5560 GGTTCAGGCTGATGCCGATGGCGGCGATGTTGA 5592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147496126574016