Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq1997 190 3e-43 seq25614 98.7 1e-15 >seq1997 Length=5797 Score = 190 bits (210), Expect = 3e-43 Identities = 550/835 (66%), Gaps = 17/835 (2%) Strand=Plus/Plus Query 17860 AGCTTTTTTGTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATAT 17919 |||||| | |||||| ||| |||| |||||||||||||| || || | || || || Sbjct 1821 AGCTTTCTGATATTCTGAAACTCTTTTTTCGAAGAAATTTGTTTTACCCTGTAAAGAGAT 1880 Query 17920 TAAATTCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTATTAATTCGTA 17979 | || |||||||||||| ||||| | | ||||| | || | | |||||| Sbjct 1881 CATATCCATAAAATCAAACGGATTCGCAGAGTTATACACTCTTGCACATCCTAATTCTAC 1940 Query 17980 TAATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAG 18039 ||||||||| || | ||||||||| | ||||||| ||| || | ||||| || | Sbjct 1941 TAATAATCTGTCGGTTACAAATTCTAAGTATTGTGTCATTAAGTTTGCGTTCATTCCAAT 2000 Query 18040 TAGTCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTAT 18099 || || | || |||| || | ||||||||| | || || |||| || || | | Sbjct 2001 TAAGCTCACCGGAAGAGATTCTGTTATAAATTCTCTTTCAATATCAAGAGCCTGTACCAG 2060 Query 18100 TATGTTTATTACCCTAGATTTTGGCAATTTATTAATTATGTGATTATAATATAATAAACA 18159 || | | | | || | ||||| | |||||||| | ||| | | | || | || Sbjct 2061 GATTTCTGTAATTCTGGCTTTTGAAACTTTATTAACGAGGTGGTGGTTGTGCAA-ATGCA 2119 Query 18160 C-GCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACC 18218 | ||||||||| |||| |||||||| | || || ||||| || ||| || | | Sbjct 2120 CTGCAAAATCACAATGTACGCCTTCATCACGTGAAATCAATTCATTTGAAAAAGTAAGAC 2179 Query 18219 CGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAA-ACTACTAGAAAAGAAT 18277 | ||||| | || | |||||| | |||| | || || ||| || || || || || Sbjct 2180 CCGGCATCAATCCACGTTTTTTCAACCAATAGATAGAACAGAATGCTCCT-GAGAAAAAG 2238 Query 18278 ATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAGT 18337 || || || ||| || || || || | |||||||||||| || || | ||| Sbjct 2239 ATTCCTTCTACGGCTGCAAAAGCAATCAGTCTTTCAGCAAA--TGAATCGGAT--TCA-- 2292 Query 18338 ATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGG-TATACTCTCTATAGCATT 18396 ||||||||| ||||| || ||| || ||| ||||| || | ||| | Sbjct 2293 ATCCATTTTAAAGCCCAGTCCGCTTTTTTCTTAATTGCCGGAAATACT-TCCAAAGCGTG 2351 Query 18397 AAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACAT 18456 || | | || |||||| |||||||| ||| || || || | | |||||| | Sbjct 2352 GAAAAGCTGGTCCTTTTCTGCTTCATCTTTTACATACGTATCAATCAGAAGAGAATAGGT 2411 Query 18457 TTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATA 18516 ||| || || | ||||| || || || | || || || |||| || ||||| Sbjct 2412 TTCGCTGTGGATATTCTCCATCATGATTTGGAATCCGTAGAAAAATTTAGCTTCCGGATA 2471 Query 18517 TTGAATCTCG-CTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATG 18575 ||||| ||| || ||||| | ||| ||| || ||||| || |||||||| | | | Sbjct 2472 TTGAACTTCGTTTACAAAAT-TCTCTGCCAGGTTTTCATTCACAATACCGTCTGATGCAG 2530 Query 18576 CGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAG---ATTGTTCC 18632 | ||||| || |||| || ||| || |||| ||| |||| || || || |||||||| Sbjct 2531 CAAAAAAAGCTAAAATATGTTTGATAAAATATTTCTCATCATTATTCAGCTTATTGTTCC 2590 Query 18633 ATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTC 18687 | || || ||| | | ||||| |||||| | ||||||||| || ||| Sbjct 2591 AGTCTGATAAATCCTGGTGCAAATCAATTTCTTCGGCAGTCCAAAAACTTGCTTC 2645 >seq25614 Length=477 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | |||||| | |||||||| || |||||||| ||||| || || Sbjct 270 ATGCAAATCTTTGTAAAAACACTAACTGGAAAGACAATTACATTGGAAGTTGAGAGCTCG 211 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||| || || || || || || ||||| || || || || || Sbjct 210 GACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCTGACCAG 151 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | || ||||||||||| || ||| ||| || || | ||||| ||| Sbjct 150 CAGAGGCTTATCTTCGCTGGTAAGCAGCTGGAGGATGGCAGGACCTTGGCTGATTACAAT 91 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || || ||| || |||| || ||||| ||| | | ||||||| || Sbjct 90 AT-TCAAAAGGAATCGACCCTGCATTTGGTGCTTCGTCTAAGAGGAGG 44 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731546875012400