Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq14623 113 9e-20 seq32362 107 4e-18 >seq14623 Length=969 Score = 113 bits (124), Expect = 9e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| ||||| | || | ||| || |||| ||||| ||||| || ||| Sbjct 947 ATGCCACCTCTCAGACGGAGGACAAGATGCAAGGTAGATTCTTTCTGAATATTGTAGTCA 888 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | ||||| |||| || | ||||| ||||||||||| | | ||| || ||||| Sbjct 887 GCAAGGGTTCGGCCATCTTCGAGCTGTTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGG 828 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || || ||||| ||| || ||||| || | || || || Sbjct 827 GGGATGCCTTCCTTGTCCTGTATCTTAGCCTTCACATTGTCGATGGTGTCCGAGCTCTCC 768 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | ||||||||| ||||| |||| ||||| | ||| |||||||| Sbjct 767 ACTTCCAAAGTAATGGTCTTACCTGTTAGGGTTTTGACAAAGATCTGCAT 718 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| || ||||| | || | || || || | ||||| ||| || ||||| Sbjct 719 ATGCCACCCCTCAGACGGAGGACCAGGTGCAAGGTGGATTCTTTCTGGATGTTGTAATCG 660 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | |||| |||| || | || || || ||||||||||| | ||| || ||||| Sbjct 659 GCAAGGGTTCTACCATCCTCGAGCTGCTTTCCGGCAAAGATTAAACGCTGCTGGTCAGGG 600 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || ||||| || || || || || |||||| |||| ||| || || Sbjct 599 GGAATGCCCTCTTTGTCCTGGATCTTGGCCTTGACATTATCAATAGTATCCGAGCTCTCA 540 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | || || || || ||||| | ||||||| ||| |||||||| Sbjct 539 ACTTCCAAGGTGATCGTCTTTCCAGTGAGGGTTTTAACAAAAATCTGCAT 490 >seq32362 Length=298 Score = 107 bits (118), Expect = 4e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||| | ||||| || || | || | |||| || || ||| |||||||| | Sbjct 232 CCACCACGCAGACGCAAGACAAGGTGAAGTGTAGATTCCTTCTGGATGTTATAATCGGCC 173 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | ||||| |||| |||| |||||||||||||| || | ||||| ||||||||||| Sbjct 172 AGAGTTCGCCCATCCTCCAGCTGTTTACCAGCAAATATGAGCCTCTGCTGATCAGGTGGA 113 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || ||||| || || || ||||| |||||| ||| || | ||| || || || Sbjct 112 ATCCCTTCCTTGTCCTGAATTTTCGCTTTTACGTTATCAATCGTATCGGAGCTCTCAACC 53 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || || || || || || || || | |||||||||||| Sbjct 52 TCCAGTGTGATAGTCTTGCCTGTCAACGTCTTCACAAATATCTGCAT 6 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984031723492650