Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq1997 100 5e-16 seq32362 95.1 2e-14 >seq1997 Length=5797 Score = 100 bits (110), Expect = 5e-16 Identities = 335/515 (65%), Gaps = 16/515 (3%) Strand=Plus/Plus Query 38831 TTTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAA 38890 ||| || ||||| |||||| |||||||||| || |||||||| || | ||| || || | Sbjct 1824 TTTCTGATATTCTGAAACTCTTTTTTCGAAGAAATTTGTTTTACCCTGTAAAGAGATCAT 1883 Query 38891 ATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATACATATAA 38950 || |||||||||||| ||||| | ||||| | || | | | ||| | ||| Sbjct 1884 ATCCATAAAATCAAACGGATTCGCAGAGTTATACACTCTTGCACATCCTAATTCTACTAA 1943 Query 38951 TAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATAA 39010 |||||| |||| |||||||| | |||||| |||||| | ||||| || | ||| Sbjct 1944 TAATCTGTCGGTTACAAATTCTAAGTATTGTGTCATTAAGTTTGCGTTCATTCCAATTAA 2003 Query 39011 TTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaattat 39070 | | || | | || ||||||||| |||| || || | ||| ||| | || Sbjct 2004 GCTCACCGGAAGAGATTCTGTTATAAATTCTCTTTCAATATCAAGAGCCTGTACCAGGAT 2063 Query 39071 cataattatattattttttgataatttatatttaatatgattcgcatataGTAAA--CA- 39127 | || | |||||| | |||| |||| | | | | ||| || Sbjct 2064 TTCTGTAATTCTGGCTTTTGAAACTTTA---TTAACGAGGTGGTGGTTGTGCAAATGCAC 2120 Query 39128 TGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCC 39187 ||||||||| ||||| ||||| || | || || |||||||| |||||| | || Sbjct 2121 TGCAAAATCACAATGTACGCCTTCATCACGTGAAATCAATTCATTTGAAAAAGTAAGACC 2180 Query 39188 TGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAA--CTACTAGAAAAGAAT 39245 ||||| ||||| | ||||| | |||| | || || || || || || || || || Sbjct 2181 CGGCATCAATCCACGTTTTTTCAACCAATAGATAGA-ACAGAATGCTCCT-GAGAAAAAG 2238 Query 39246 ATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAA 39305 || || || || ||||| || || | |||| | || ||| ||| | | Sbjct 2239 ATTCCTTCTACGGCTGCAAAAGCAATCAGTCTTTCAGCA------AATGAATCGGATTCA 2292 Query 39306 ATCCAATTTATGGCCCAATCTGCtttttttttGAT 39340 ||||| |||| ||||| || |||||||| || || Sbjct 2293 ATCCATTTTAAAGCCCAGTCCGCTTTTTTCTTAAT 2327 >seq32362 Length=298 Score = 95.1 bits (104), Expect = 2e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 || |||||||| | | || ||| | || |||| |||||||||||||| || | ||| Sbjct 187 ATGTTATAATCGGCCAGAGTTCGCCCATCCTCCAGCTGTTTACCAGCAAATATGAGCCTC 128 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || || |||||||| || ||||| || || || ||||| |||||| ||| || ||| Sbjct 127 TGCTGATCAGGTGGAATCCCTTCCTTGTCCTGAATTTTCGCTTTTACGTTATCAATCGTA 68 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || || || || || || || || || || || || || || | ||||||||| Sbjct 67 TCGGAGCTCTCAACCTCCAGTGTGATAGTCTTGCCTGTCAACGTCTTCACAAATATCTGC 8 Query 172068 AT 172069 || Sbjct 7 AT 6 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904733904646200