Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_021298.1 Length=51252 Score E Sequences producing significant alignments: (Bits) Value seq6008 192 2e-44 seq21255 187 8e-43 seq19878 183 1e-41 seq6617 174 5e-39 seq7953 147 7e-31 seq25480 114 4e-21 seq26503 96.9 1e-15 seq3028 80.6 9e-11 >seq6008 Length=2324 Score = 192 bits (212), Expect = 2e-44 Identities = 193/251 (77%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 40502 GAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGAT 40561 |||||||||||||| |||||||||||||| |||||||| |||||||| || ||||| | Sbjct 1035 GAAGTCGATGTCGAAGTCGGGCATGGACACCCGCTCGGGATTCAGGAAGCGTTCGAACAG 1094 Query 40562 GAGTCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACC 40621 || || || ||||||||| |||||||||||| ||| ||||||| |||||||| || Sbjct 1095 CAGGTTGTACTGCAGCGGGTCCAGGTCGGTGATCTTGAGCGCGTAGGCCACCAGCGAGCC 1154 Query 40622 GGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAA 40681 ||| | || || || || || ||||| | |||||||||||||||||| | ||||| Sbjct 1155 GGCACCGGACCCCCGTCCCGGCCCGACAGGGCAGCCGTTCTCCTTCGCCCACTGAATGAA 1214 Query 40682 GTCCGCGACGACGAGGAAGTACGACGGGAAGCCCATCTGGATGATCATGTCGATCTCGTA 40741 ||| | |||| |||||||| ||||||||||||| || ||| || | | ||| | Sbjct 1215 GTCGCCCACGATCAGGAAGTAGCCGGGGAAGCCCATCTTGAGGATGGTGCCCAGTTCGAA 1274 Query 40742 CTGGAGCTGCT 40752 || ||| ||| Sbjct 1275 CTCCAGCCGCT 1285 Score = 109 bits (120), Expect = 2e-19 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 39500 GCCTCGCTCGCGCGCTCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGAACCTCGGGCTT 39559 |||| |||| ||||||||| ||||| || || | | ||||| |||||| ||| Sbjct 30 GCCTTTCTCGGCCGCTCCCTTGCGGAAGATCTCGCGGTGTTCGGCCATCTCCTCGGCCTT 89 Query 39560 CTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTGACCGAGGGTGTACCCGGCCATGAC 39619 |||||||||||| |||||||| |||| |||||| ||||||| |||| ||| ||| || Sbjct 90 CTTCTTGCCCATGGCCCGGCGCAGCATGTCGGCACCACCGAGGCTGTAGCCGCCCAGCAC 149 Query 39620 CTGCGCAACCTTCTGCACCTGCTCCTGGTAGATGATGA 39657 ||| || || | ||||||||||||||| | |||| Sbjct 150 CTGGGCGGTCTGCATCACCTGCTCCTGGTACACCATGA 187 >seq21255 Length=623 Score = 187 bits (206), Expect = 8e-43 Identities = 217/291 (75%), Gaps = 4/291 (1%) Strand=Plus/Minus Query 40451 CCCGTACTTCCGGGTGACGTACTGGATCACCTCGCCACGACGCCGGTCATC--GAAGTCG 40508 ||||||||| || | ||||| | |||||||||| | || || | ||| ||||||| Sbjct 360 CCCGTACTTGCGCGCAACGTAGTCGATCACCTCGTCGCGGCG--GTCCATGCAGAAGTCG 303 Query 40509 ATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGTCCG 40568 ||||||| |||||||| |||||||| |||||||||||||| |||||||| | || | Sbjct 302 ATGTCGAAGTCGGGCATCGACACGCGTTCGGGGTTCAGGAAGCGCTCGAACAGCAGGTTG 243 Query 40569 TGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCA 40628 | | ||||||||| |||||||||||| || | | || |||||||| ||||| | Sbjct 242 TACGGCAGCGGGTCCAGGTCGGTGATCTTCAGCGCCCATGCCACCAGCGAGCCGGCACCC 183 Query 40629 GAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCG 40688 || || || || ||||||| | | ||| | | ||| |||| |||||||||| || Sbjct 182 GAACCACGGCCGGGGCCGATCGGAATGCCCTGGTTCTTGCCCCACTGGATGAAGTCGGCC 123 Query 40689 ACGACGAGGAAGTACGACGGGAAGCCCATCTGGATGATCATGTCGATCTCG 40739 |||| |||||||| ||||||||||||| |||||| ||| || |||| Sbjct 122 ACGATCAGGAAGTAGCCGGGGAAGCCCATCTTGATGATGGTGTTGAGCTCG 72 >seq19878 Length=680 Score = 183 bits (202), Expect = 1e-41 Identities = 209/279 (75%), Gaps = 4/279 (1%) Strand=Plus/Plus Query 40467 ACGTACTGGATCACCTCGCCACGACGCCGGTCATC--GAAGTCGATGTCGACATCGGGCA 40524 ||||| | ||||||| | |||| |||| ||| |||||||| ||||| ||||||| Sbjct 107 ACGTAGTCGATCACCCGGTCACG--GCCGTCCATGCAGAAGTCGACGTCGAAGTCGGGCA 164 Query 40525 TGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGTCCGTGCTCCAGCGGGTCGA 40584 |||| || || || ||||| ||||| |||||||| | || ||| |||||||||||| Sbjct 165 TGGAAACACGTTCAGGGTTGAGGAAGCGCTCGAACAGCAGGTCGTAGGCCAGCGGGTCGA 224 Query 40585 GGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCTCGCCCAGGGC 40644 | ||||||||| || || ||||| ||||||||||| || | || || || || |||| Sbjct 225 GATCGGTGATCTTCAGTACATAGGCCACCAGCGAACCAGCACCCGAACCGCGGCCCGGGC 284 Query 40645 CGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACG 40704 | ||| || |||| | ||| ||||| |||||||||| || | |||||||| Sbjct 285 CAACCGGTACATCGTTGTTCTTGGCCCACTTGATGAAGTCCATAACAATCAGGAAGTAAC 344 Query 40705 ACGGGAAGCCCATCTGGATGATCATGTCGATCTCGTACT 40743 |||||||||||||||||||| ||||| | |||| ||| Sbjct 345 CGGGGAAGCCCATCTGGATGATGATGTCCAGCTCGAACT 383 >seq6617 Length=2135 Score = 174 bits (192), Expect = 5e-39 Identities = 186/243 (77%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 40502 GAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGAT 40561 |||||| | ||||| |||||||||||||| |||||||| || ||||| |||||||| | Sbjct 731 GAAGTCCACGTCGAAGTCGGGCATGGACACACGCTCGGGATTGAGGAAACGCTCGAACAG 672 Query 40562 GAGTCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACC 40621 || || ||||||||||| ||||| |||||| ||| |||||||| |||||||| || Sbjct 671 CAGGTTGTATTCCAGCGGGTCCAGGTCCGTGATCTTGAGCACGTAGGCCACCAGCGAGCC 612 Query 40622 GGCCGCAGAGCCTCGCCCAGGGCCGACCCAGAC-GCCGTTCTCCTTCGCCCAGCGGATGA 40680 ||| | || || || || || || | | ||| |||||| ||| ||||| ||||| Sbjct 611 GGCGCCCGATCCGCGGCCCGGACCCA-CGGGACAGCCGTTGAGCTTGGCCCACTTGATGA 553 Query 40681 AGTCCGCGACGACGAGGAAGTACGACGGGAAGCCCATCTGGATGATCATGTCGATCTCGT 40740 |||| | |||| ||||||||| ||| |||||||||| || ||| || |||||||| Sbjct 552 AGTCACCCACGATGAGGAAGTAGCCCGGAAAGCCCATCTTGAGGATGGTGCCGATCTCGA 493 Query 40741 ACT 40743 ||| Sbjct 492 ACT 490 >seq7953 Length=1812 Score = 147 bits (162), Expect = 7e-31 Identities = 223/316 (71%), Gaps = 6/316 (2%) Strand=Plus/Plus Query 39345 AGCGCAGCCGCCATGTACTCGGCTGGGTAGTGCGTCTTCAGCCACGCCGTGCGGTACGCG 39404 |||| || |||||| |||||| ||||||||| |||||||||| ||||| |||||||| Sbjct 1218 AGCGTCGCGGCCATGAACTCGGACGGGTAGTGCTTCTTCAGCCAGGCCGTCTGGTACGCG 1277 Query 39405 ATGAGTCCGTACGCCGCCGAGTGCGCCTTGTTGAAGGCGTAGCCAGCGAACGGGACCAGC 39464 | || |||||| || | ||||| |||||||||| ||||||| |||||| ||| | Sbjct 1278 ACCAGCGAGTACGCGGCGGCGTGCGACTTGTTGAAGCCGTAGCCCGCGAACTTCTCCATC 1337 Query 39465 ACGTCCCACACTGCCTGGA---TGGCACCGTCCGAGTAGCCTCGCTCGCGCGCTCCCTTC 39521 | ||| | | | | | | ||| || || | ||| | || | || || | Sbjct 1338 AGGTCGAAGATTTCGTCGGCCTTGGGGCCATC---GACGCCGCCCTTGGCTGCACCTTCG 1394 Query 39522 TGGAAGTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATCGCCCGGCGA 39581 ||||| || || | |||||||| | | ||| ||||||||||||||| ||||| Sbjct 1395 CGGAAGATCTCGCGGTGCTTGGCCATTTCGGCCGGCACCTTCTTGCCCATCGCGCGGCGC 1454 Query 39582 AGCAGGTCGGCCTGACCGAGGGTGTACCCGGCCATGACCTGCGCAACCTTCTGCACCTGC 39641 ||||||||||| || || | ||| ||| | | || |||||| | || | |||||| Sbjct 1455 AGCAGGTCGGCGCCGCCCAGCGAGTAGCCGCCGACGATCTGCGCCATCTGCATGACCTGC 1514 Query 39642 TCCTGGTAGATGATGA 39657 |||||||||| |||| Sbjct 1515 TCCTGGTAGACCATGA 1530 >seq25480 Length=481 Score = 114 bits (126), Expect = 4e-21 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 40419 CCGTACGTCGCGATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTGACGTACTGGATC 40478 ||||| || |||||| ||| |||| |||||||| || | |||||| | ||| Sbjct 227 CCGTAGGTGATGATCTGGCTGACGCGGTCGCGGCCGTACTTGCGCGCGACGTAGTCGATG 168 Query 40479 ACCTCGCCACGACGCCGGTCATC--GAAGTCGATGTCGACATCGGGCATGGACACGCGCT 40536 || || | || || | ||| |||||||||||||| |||||||| |||||||| | Sbjct 167 ACTTCATCGCGGCG--GTCCATGCAGAAGTCGATGTCGAAGTCGGGCATCGACACGCGTT 110 Query 40537 CGGGGTTCAGGAACCGCTCGAAGATGAGTCCGTGCTCCAGCGGGTCGAGGTCGGTGATCC 40596 | || || ||||| |||||||| | || |||| | ||||||||| |||||||||| | Sbjct 109 CCGGATTGAGGAAGCGCTCGAACAGCAGCCCGTACGGCAGCGGGTCCAGGTCGGTGACCT 50 Query 40597 CGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCTCGCCCAGGGCC 40645 || | | ||||||||||| || || | ||||| || || || || Sbjct 49 GCAGCGCCCACGCGACCAGCGAGCCCGCGCCCGAGCCGCGGCCGGGACC 1 >seq26503 Length=451 Score = 96.9 bits (106), Expect = 1e-15 Identities = 141/196 (72%), Gaps = 5/196 (3%) Strand=Plus/Minus Query 40518 TCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGTCCGTGCTCC--A 40575 |||||||| |||||||| || ||||| ||||| || ||||||| || || | | | Sbjct 447 TCGGGCATCGACACGCGTTCCGGGTTGAGGAAGCGTTCGAAGAGCAG--CGAGAAACGTA 390 Query 40576 GCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCTC 40635 |||| |||| ||||| ||| || | |||||||||||||| || || | || || | Sbjct 389 GCGGATCGACATCGGTAATCGTCAGCGCATAGGCGACCAGCGATCCCGCACCCGAACCAC 330 Query 40636 GCCCAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGA 40695 | || ||||||||| | | | || ||| ||||| ||||||||| || |||| | Sbjct 329 GACCGGGGCCGACCGGAATATCATGCTGCTTTGCCCATTTGATGAAGTCGGCAACGATAA 270 Query 40696 GGAAGTACGACGGGAA 40711 | ||||| | |||||| Sbjct 269 GAAAGTA-GCCGGGAA 255 >seq3028 Length=4196 Score = 80.6 bits (88), Expect = 9e-11 Identities = 109/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 40497 TCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCG 40556 ||||| || || || |||| ||||||||||||||| || || || |||||||| ||||| Sbjct 1798 TCATCAAAATCAATATCGATATCGGGCATGGACACACGATCCGGATTCAGGAAACGCTCA 1739 Query 40557 AAGATGAGTCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGC 40616 || | | | | || |||||||| | ||| || || | |||||| || | | Sbjct 1738 AAAAGCAAATCATAAAGCATCGGGTCGATATTGGTAATTCCCAAACAGTAGGCCACAACC 1679 Query 40617 GAACCGGCCGCAGAGCCTCGCCCAGGGCCGAC 40648 ||||| || || || ||||| ||||| || || Sbjct 1678 GAACCTGCAGCCGAACCTCGGCCAGGACCTAC 1647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163815636414852