Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_021299.1 Length=80955 Score E Sequences producing significant alignments: (Bits) Value seq23296 129 3e-25 seq1923 86.0 3e-12 >seq23296 Length=550 Score = 129 bits (142), Expect = 3e-25 Identities = 136/179 (76%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 59290 GACGACAAGGATCTTGAGGTCTGGAACCGGTTGACCAACAACTTCTGGCTGCCAGAGAAG 59349 ||||| |||||||| ||||| |||||||| |||||| ||||||||||||||| || ||| Sbjct 367 GACGATAAGGATCTGGAGGTGTGGAACCGCCTGACCAGCAACTTCTGGCTGCCGGAAAAG 426 Query 59350 ATCCCTGTCTCCAACGACATCCCGGCCTGGGGCACGCTGACGGAGGAAGAGCAAGTCCTC 59409 | || | || || ||| ||| | |||||| ||| |||| | | ||||| || Sbjct 427 GTGCCCCTGTCGAATGACGTCCAGTCCTGGGCCACCCTGAGCCACGCCGAGCAGCAGCTT 486 Query 59410 ACGATGCGGGTCTTCACCGGCCTGACGATGCTCGACACGATCCAGGGCACCGTGGGTGC 59468 || || || ||||| ||||||||||| ||||||||||| | ||| ||| ||||| || Sbjct 487 ACCATTCGCGTCTTTACCGGCCTGACCCTGCTCGACACGGTGCAGAACACGGTGGGCGC 545 >seq1923 Length=5946 Score = 86.0 bits (94), Expect = 3e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 61684 ATCGCGGAGATGCCGTTCATCTACCCGCACCTGGCGCTGATGCCGGATGCCCACTCGGGC 61743 ||||| | ||| |||||| | ||| |||| |||||||||| | ||| |||| Sbjct 3398 ATCGCCGCGATCCCGTTCGTTGGGCCGTGGGTGGCCGTGATGCCGGACGTGCACCTGGGC 3457 Query 61744 AAGGGATCTGCGGTCGGCACCGTCATCCCCACCAAGGGCGCTGTCATTCCGGCCGCTGTT 61803 ||||| | | |||||| | || ||||| ||| || || |||| |||||||| || Sbjct 3458 AAGGGCGCGACCGTCGGCTCGGTGATCCCGACCCGCGGTGCGATCATCCCGGCCGCAGTC 3517 Query 61804 GGGGTGGACATCGGCTGCGGCATGATTGCCGT 61835 || || |||||||||||||||||| ||||| Sbjct 3518 GGCGTCGACATCGGCTGCGGCATGGCGGCCGT 3549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 258819048724764