Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_021304.1 Length=51552 Score E Sequences producing significant alignments: (Bits) Value seq6008 192 2e-44 seq21255 187 8e-43 seq19878 183 1e-41 seq6617 174 5e-39 seq25480 120 1e-22 seq26503 98.7 3e-16 seq3028 80.6 9e-11 >seq6008 Length=2324 Score = 192 bits (212), Expect = 2e-44 Identities = 193/251 (77%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 40790 GAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGAT 40849 |||||||||||||| |||||||||||||| |||||||| |||||||| || ||||| | Sbjct 1035 GAAGTCGATGTCGAAGTCGGGCATGGACACCCGCTCGGGATTCAGGAAGCGTTCGAACAG 1094 Query 40850 GAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACC 40909 || || || ||||||||| |||||||||||| ||| ||||||| |||||||| || Sbjct 1095 CAGGTTGTACTGCAGCGGGTCCAGGTCGGTGATCTTGAGCGCGTAGGCCACCAGCGAGCC 1154 Query 40910 GGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAA 40969 ||| | || || || || || ||||| | |||||||||||||||||| | ||||| Sbjct 1155 GGCACCGGACCCCCGTCCCGGCCCGACAGGGCAGCCGTTCTCCTTCGCCCACTGAATGAA 1214 Query 40970 GTCCGCGACGACGAGGAAGTACGACGGGAAGCCCATCTGGATGATCATGTCGATCTCGTA 41029 ||| | |||| |||||||| ||||||||||||| || ||| || | | ||| | Sbjct 1215 GTCGCCCACGATCAGGAAGTAGCCGGGGAAGCCCATCTTGAGGATGGTGCCCAGTTCGAA 1274 Query 41030 CTGGAGCTGCT 41040 || ||| ||| Sbjct 1275 CTCCAGCCGCT 1285 Score = 105 bits (116), Expect = 2e-18 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 39788 GCCTCGCTCGCGCGCTCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGAACCTCGGGCTT 39847 |||| |||| ||||||||| ||||| || || | | ||||| |||||| ||| Sbjct 30 GCCTTTCTCGGCCGCTCCCTTGCGGAAGATCTCGCGGTGTTCGGCCATCTCCTCGGCCTT 89 Query 39848 CTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTGACCGAGGGTGTACCCGGCCATGAC 39907 |||||||||||| |||||||| |||| |||||| ||||||| |||| ||| ||| || Sbjct 90 CTTCTTGCCCATGGCCCGGCGCAGCATGTCGGCACCACCGAGGCTGTAGCCGCCCAGCAC 149 Query 39908 CTGTGCAACCTTCTGCACTTGCTCCTGGTAGATGATGA 39945 ||| || || | ||| ||||||||||| | |||| Sbjct 150 CTGGGCGGTCTGCATCACCTGCTCCTGGTACACCATGA 187 >seq21255 Length=623 Score = 187 bits (206), Expect = 8e-43 Identities = 217/291 (75%), Gaps = 4/291 (1%) Strand=Plus/Minus Query 40739 CCCGTACTTCCGGGTGACGTACTGGATCACCTCGCCACGACGCCGGTCATC--GAAGTCG 40796 ||||||||| || | ||||| | |||||||||| | || || | ||| ||||||| Sbjct 360 CCCGTACTTGCGCGCAACGTAGTCGATCACCTCGTCGCGGCG--GTCCATGCAGAAGTCG 303 Query 40797 ATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCG 40856 ||||||| |||||||| |||||||| |||||||||||||| |||||||| | || | Sbjct 302 ATGTCGAAGTCGGGCATCGACACGCGTTCGGGGTTCAGGAAGCGCTCGAACAGCAGGTTG 243 Query 40857 TGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCA 40916 | | ||||||||| |||||||||||| || | | || |||||||| ||||| | Sbjct 242 TACGGCAGCGGGTCCAGGTCGGTGATCTTCAGCGCCCATGCCACCAGCGAGCCGGCACCC 183 Query 40917 GAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCG 40976 || || || || ||||||| | | ||| | | ||| |||| |||||||||| || Sbjct 182 GAACCACGGCCGGGGCCGATCGGAATGCCCTGGTTCTTGCCCCACTGGATGAAGTCGGCC 123 Query 40977 ACGACGAGGAAGTACGACGGGAAGCCCATCTGGATGATCATGTCGATCTCG 41027 |||| |||||||| ||||||||||||| |||||| ||| || |||| Sbjct 122 ACGATCAGGAAGTAGCCGGGGAAGCCCATCTTGATGATGGTGTTGAGCTCG 72 >seq19878 Length=680 Score = 183 bits (202), Expect = 1e-41 Identities = 209/279 (75%), Gaps = 4/279 (1%) Strand=Plus/Plus Query 40755 ACGTACTGGATCACCTCGCCACGACGCCGGTCATC--GAAGTCGATGTCGACATCGGGCA 40812 ||||| | ||||||| | |||| |||| ||| |||||||| ||||| ||||||| Sbjct 107 ACGTAGTCGATCACCCGGTCACG--GCCGTCCATGCAGAAGTCGACGTCGAAGTCGGGCA 164 Query 40813 TGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGA 40872 |||| || || || ||||| ||||| |||||||| | || ||| |||||||||||| Sbjct 165 TGGAAACACGTTCAGGGTTGAGGAAGCGCTCGAACAGCAGGTCGTAGGCCAGCGGGTCGA 224 Query 40873 GGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCTCGCCCAGGGC 40932 | ||||||||| || || ||||| ||||||||||| || | || || || || |||| Sbjct 225 GATCGGTGATCTTCAGTACATAGGCCACCAGCGAACCAGCACCCGAACCGCGGCCCGGGC 284 Query 40933 CGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACG 40992 | ||| || |||| | ||| ||||| |||||||||| || | |||||||| Sbjct 285 CAACCGGTACATCGTTGTTCTTGGCCCACTTGATGAAGTCCATAACAATCAGGAAGTAAC 344 Query 40993 ACGGGAAGCCCATCTGGATGATCATGTCGATCTCGTACT 41031 |||||||||||||||||||| ||||| | |||| ||| Sbjct 345 CGGGGAAGCCCATCTGGATGATGATGTCCAGCTCGAACT 383 >seq6617 Length=2135 Score = 174 bits (192), Expect = 5e-39 Identities = 186/243 (77%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 40790 GAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGAT 40849 |||||| | ||||| |||||||||||||| |||||||| || ||||| |||||||| | Sbjct 731 GAAGTCCACGTCGAAGTCGGGCATGGACACACGCTCGGGATTGAGGAAACGCTCGAACAG 672 Query 40850 GAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACC 40909 || || ||||||||||| ||||| |||||| ||| |||||||| |||||||| || Sbjct 671 CAGGTTGTATTCCAGCGGGTCCAGGTCCGTGATCTTGAGCACGTAGGCCACCAGCGAGCC 612 Query 40910 GGCCGCAGAGCCTCGCCCAGGGCCGACCCAGAC-GCCGTTCTCCTTCGCCCAGCGGATGA 40968 ||| | || || || || || || | | ||| |||||| ||| ||||| ||||| Sbjct 611 GGCGCCCGATCCGCGGCCCGGACCCA-CGGGACAGCCGTTGAGCTTGGCCCACTTGATGA 553 Query 40969 AGTCCGCGACGACGAGGAAGTACGACGGGAAGCCCATCTGGATGATCATGTCGATCTCGT 41028 |||| | |||| ||||||||| ||| |||||||||| || ||| || |||||||| Sbjct 552 AGTCACCCACGATGAGGAAGTAGCCCGGAAAGCCCATCTTGAGGATGGTGCCGATCTCGA 493 Query 41029 ACT 41031 ||| Sbjct 492 ACT 490 >seq25480 Length=481 Score = 120 bits (132), Expect = 1e-22 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 40707 CCGTACGTCGCGATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTGACGTACTGGATC 40766 ||||| || |||||| ||| |||| |||||||| || | |||||| | ||| Sbjct 227 CCGTAGGTGATGATCTGGCTGACGCGGTCGCGGCCGTACTTGCGCGCGACGTAGTCGATG 168 Query 40767 ACCTCGCCACGACGCCGGTCATC--GAAGTCGATGTCGACATCGGGCATGGACACGCGCT 40824 || || | || || | ||| |||||||||||||| |||||||| |||||||| | Sbjct 167 ACTTCATCGCGGCG--GTCCATGCAGAAGTCGATGTCGAAGTCGGGCATCGACACGCGTT 110 Query 40825 CGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCC 40884 | || || ||||| |||||||| | ||||||| | ||||||||| |||||||||| | Sbjct 109 CCGGATTGAGGAAGCGCTCGAACAGCAGCCCGTACGGCAGCGGGTCCAGGTCGGTGACCT 50 Query 40885 CGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCTCGCCCAGGGCC 40933 || | | ||||||||||| || || | ||||| || || || || Sbjct 49 GCAGCGCCCACGCGACCAGCGAGCCCGCGCCCGAGCCGCGGCCGGGACC 1 >seq26503 Length=451 Score = 98.7 bits (108), Expect = 3e-16 Identities = 139/194 (72%), Gaps = 1/194 (1%) Strand=Plus/Minus Query 40806 TCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGC 40865 |||||||| |||||||| || ||||| ||||| || ||||||| ||| | ||| Sbjct 447 TCGGGCATCGACACGCGTTCCGGGTTGAGGAAGCGTTCGAAGAGCAGCGAGAAACGTAGC 388 Query 40866 GGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCTCGC 40925 || |||| ||||| ||| || | |||||||||||||| || || | || || || Sbjct 387 GGATCGACATCGGTAATCGTCAGCGCATAGGCGACCAGCGATCCCGCACCCGAACCACGA 328 Query 40926 CCAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGG 40985 || ||||||||| | | | || ||| ||||| ||||||||| || |||| || Sbjct 327 CCGGGGCCGACCGGAATATCATGCTGCTTTGCCCATTTGATGAAGTCGGCAACGATAAGA 268 Query 40986 AAGTACGACGGGAA 40999 ||||| | |||||| Sbjct 267 AAGTA-GCCGGGAA 255 >seq3028 Length=4196 Score = 80.6 bits (88), Expect = 9e-11 Identities = 109/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 40785 TCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCG 40844 ||||| || || || |||| ||||||||||||||| || || || |||||||| ||||| Sbjct 1798 TCATCAAAATCAATATCGATATCGGGCATGGACACACGATCCGGATTCAGGAAACGCTCA 1739 Query 40845 AAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGC 40904 || | | | | || |||||||| | ||| || || | |||||| || | | Sbjct 1738 AAAAGCAAATCATAAAGCATCGGGTCGATATTGGTAATTCCCAAACAGTAGGCCACAACC 1679 Query 40905 GAACCGGCCGCAGAGCCTCGCCCAGGGCCGAC 40936 ||||| || || || ||||| ||||| || || Sbjct 1678 GAACCTGCAGCCGAACCTCGGCCAGGACCTAC 1647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 164775231270252