Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1997 210 6e-49 seq451 134 4e-26 seq250 132 1e-25 seq13043 107 6e-18 seq9529 107 6e-18 seq985 100 8e-16 seq79 95.1 4e-14 >seq1997 Length=5797 Score = 210 bits (232), Expect = 6e-49 Identities = 610/927 (66%), Gaps = 23/927 (2%) Strand=Plus/Plus Query 155589 ATAGACGCCAGATTACATACCGCAGTCTCCT-TGTCGTCGCTGTATTCTACAATCTCACA 155647 ||||| ||||| |||||||||||| | || | | | | | |||| || | || || Sbjct 219 ATAGAAGCCAGGTTACATACCGCAATTTCATCTTTAGAAG-TGTACTCCATGATTTCTGT 277 Query 155648 GCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGC 155707 |||||||||||| ||| || || | || |||||||| ||||||| ||| || Sbjct 278 ACACAGGTTAGAAGAGCGGATTGTTCCCAGGTTTTTCTGGTTTGATTTACGGTTTGCCGC 337 Query 155708 ATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCA 155767 ||| || || || |||||||| ||||| || || || || | |||||||| ||| ||| Sbjct 338 ATCTTTATACAGCATGTATGGTGTTCCGGTTTCAATTTGAGATTCCAGAATTTTTTCCCA 397 Query 155768 GAGGTCACGGGCATTAATTTGCTTGTTGTA--TCTGCCTTCCGACTCATATTTCATATAC 155825 || || | || ||||| | || || | |||||| | ||||| |||| Sbjct 398 AAGTTCTCTTGCCTTAAT--GGTTTTTCTTCCTCTGCCCTGTTCTTCATAAGAAGTATAA 455 Query 155826 AGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAAC 155885 |||| | | || ||||||||| |||| ||||| ||||| | | || || | | Sbjct 456 AGCGCTTCAAATTCTTCACCGTAAATATCATAAAGTCCCGGGCATTCGTTTGGACACATC 515 Query 155886 AGCGACCAAATTTTAT--TACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAG 155943 | || ||| | || | | || ||||| | ||| || | || | ||| || | Sbjct 516 AACGTCCATGTAGAATCTTCCTGA--ACACGTTTCATGAACAAGTCCGAAGTCCACATGG 573 Query 155944 CATAGAAAAGGTCCCTTGC---CTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTA 156000 || |||| | || | || | || || || | || || || ||| || || | Sbjct 574 CAAAGAATAAATCACGCGCACGCATT---TCTTCTTTTCCATGGTTTTTCTTCAGGTCAA 630 Query 156001 AGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCT 156060 ||| || |||||||| || || || | ||| ||||||||||| || || | | Sbjct 631 GGAAATCAAAAATATCAGCGTGCCATGTTTCGATATAGATAGCAAAACTTCCTTTGCGTT 690 Query 156061 TGCCACC---CTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAA 156117 | || || ||| |||||||| ||||| || | |||||| |||| | ||| |||| || Sbjct 691 TTCCTCCTCCCTGGTCTACATAACGAGCGGTATCATTGAAAACACGCAACATCGGAACAA 750 Query 156118 TACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAA 156177 | || || || || || || |||||||| |||| ||||| | | ||||||||||| | Sbjct 751 TTCCGTTTGACGTTCCGTTTGTTCCGCGGATATAGGAACCCGTGGCACGAACATTATGGA 810 Query 156178 TATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGA 156237 | || || || || || | | ||| ||||||| || || ||||| |||| | Sbjct 811 TTGAAAGCCCGATTCCTCCAGCCGATTGTGAAATTTTGGCTGTTTGCTTTAGCGTATCGT 870 Query 156238 AAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTC 156297 |||| || || ||| || || | ||||| || || |||| ||| | ||| ||| Sbjct 871 AAATTCCGTCGATACTGTCGTCCTGCATTGCCAGAAGGAAGCAGGAAGACATTTGCGGTT 930 Query 156298 GTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATAT 156357 ||| ||||| || ||||||| || || |||||||| |||| |||| || ||||| Sbjct 931 TTGGAGTTCCGGCATTGAATAACGTTGGCGTTGCATGCGTAAAGAACTTCTTGGACATCA 990 Query 156358 AATCGTATGTCTCCTTAAT-CTTC-TCAAGATTAGACCCGTGAATACAGATAGAGACCCT 156415 || || || ||| ||| || | || || | | | || || | | | || | Sbjct 991 GGTCATAAGTTTCC--AATACTGCATCCAGGTCATTCAAATGGATTCCAACGGCAACACG 1048 Query 156416 CATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGCGCG 156475 |||| |||| || || || | || ||||| ||||| ||| || || || | || Sbjct 1049 CATCAACATGTGTTGTGGTCTTTCCACAATTTTTCCATTTATTTTTAGCAGATACGAACG 1108 Query 156476 TTCCAGAGTTTTAAACCCGAAATAATC 156502 |||| || ||||| ||||||||||| Sbjct 1109 CTCCAACGTCTTAAATCCGAAATAATC 1135 >seq451 Length=16219 Score = 134 bits (148), Expect = 4e-26 Identities = 366/553 (66%), Gaps = 13/553 (2%) Strand=Plus/Plus Query 155978 GCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATA 156037 ||||||||| || || || || | ||| || | || | ||| ||| |||| || Sbjct 8890 GCCGTGATTTTTTCGGAGATCGAGGAACTCAAACACGTCTGCATGCCATGGTTCCAAGTA 8949 Query 156038 CATAGCAAAACTACCATTCCTCTTGCC---ACCCTGATCTACATACCGAGCAGTCTTATT 156094 || ||||| ||| || | || || ||| || || ||||||||||| || | || Sbjct 8950 GATTGCAAAGGAACCTTTGCGTTTACCTCCACCTTGGTCCACATACCGAGCCGTGTCGTT 9009 Query 156095 GAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATAT-GCG 156153 || || | | ||| || || ||||| ||||||| || || || || || || | || Sbjct 9010 AAACACGCGCAACATGGGGATGATACCGTTGGAAGACCCGTTAGTACCACGGATGTAGCT 9069 Query 156154 AACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTT 156213 | | | || | ||| || || | |||||||| || | ||| || || || Sbjct 9070 GTTCGTA-GCTCGGATATTGTGCATGCTGATCCCAATACCTCCCGCCCACTTTGAGATAC 9128 Query 156214 GAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTA 156273 ||| |||| ||| | |||| | || |||||||| |||||||||| ||| | |||| Sbjct 9129 AAGCACATTGCTTCAATGTATCATAGATTCCTTCAATTGAATCATCTTGCATGGCAAGTA 9188 Query 156274 GATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCAT 156333 | | |||||| |||||| || ||||| || ||||| || || | || || || |||| Sbjct 9189 AAAAACACGAAGATAATTGCGGCCGTGGAGTGCCAGCATTAAACAACGTGGGCGTCGCAT 9248 Query 156334 GAATAAAATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTC-AAGATTAGAC 156392 | |||| |||| | |||||| | ||||| ||||| | || || || || || | Sbjct 9249 GGGTAAAGAACTTTTGAGACATCAATTCGTACGTCTC-TAAAGCTGCTTGAATGTTGCTC 9307 Query 156393 CCGTGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACT--- 156449 ||||| | | || || | ||| ||| ||||| || || || || |||| Sbjct 9308 TTATGAATCCCAAGAGCAACGCGCATAATCATTTGCTGGGGTCGTTCAAC---CACTTTG 9364 Query 156450 CCATCAATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATAATCAAACAGA 156509 |||| | || | |||||| | | ||||| ||||||||||| || ||||| || | Sbjct 9365 CCATTCACGCGGAAAAGGTAACCTCTCTCCAGTGTTTTAAACCCAAAGTAATCGTACTCA 9424 Query 156510 AAATCACGGTTGT 156522 || || |||| || Sbjct 9425 AAGTCCCGGTCGT 9437 >seq250 Length=21463 Score = 132 bits (146), Expect = 1e-25 Identities = 202/281 (72%), Gaps = 14/281 (5%) Strand=Plus/Plus Query 302593 CGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGA 302652 || || || ||||||||||| | || || ||||| |||||||| ||||| ||||| Sbjct 8419 CGTCGTTGGATATAACCAGTCTCGGCAGTCTTCACAGCGGTATCAATCAGACCTTCACGA 8478 Query 302653 CCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT--AGCCCCCCAATAAAGGAGCTCT 302710 ||||||||||| || ||||| | ||| | |||| || ||||| ||| | || | | Sbjct 8479 CCACCCATAGCGTGAAAGAAAAACTCCTGCGGT-GTCAAGCCCTTCAA-GTACGAATTTT 8536 Query 302711 CAACGAAACCACGCGCCTCGGG---CGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCC 302767 | || |||||||| ||| || | ||||||| |||| |||| ||||| || | Sbjct 8537 CCACAAAACCACGACTCTCAGGACCCAAATCGTC---CTTGCCGTAGTGCGGCAGCGTGC 8593 Query 302768 TGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAA 302827 || | | |||| || || ||||||||||| || || |||||||| |||| || | || Sbjct 8594 GGTGGTTAAAGCCATACGGAATACGCTTTCCTTCCACATTCTGCTGACCCACACAAGCAA 8653 Query 302828 TCATCTGCGAAATATTTAAATCACTG--CCCTTGGAGCCAG 302866 | || |||||||| || ||| | | ||||||||||||| Sbjct 8654 TAATTTGCGAAATGTT--AATGAACGAACCCTTGGAGCCAG 8692 >seq13043 Length=1099 Score = 107 bits (118), Expect = 6e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 |||||||||||||| ||||||||||| || | ||||| |||| | | || | Sbjct 199 CCAACAGCATCAATCTCGTCAATGAATATGATGGCAGGAGATTTTTCTTTTGCCTGTTTG 140 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 ||||| |||||||||||||| || || | ||| ||| ||||||| || || |||||| | Sbjct 139 AATAAGTCTCTTACACGGGAAGCACCCACACCTACAAACATTTCAACGAAATCAGAACCT 80 Query 289150 GATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTA 289209 || | || ||||| || |||||||| || || ||||| | |||| | || || Sbjct 79 GAAAGCGAAAAGAATGGCACTTTTGCTTCACCGGCAACTGCTTTTGCCAATAAGGTTTTT 20 Query 289210 CCTGTTCCAGGTGGTCC 289226 || ||||| || || || Sbjct 19 CCAGTTCCCGGAGGGCC 3 >seq9529 Length=1512 Score = 107 bits (118), Expect = 6e-18 Identities = 250/367 (68%), Gaps = 20/367 (5%) Strand=Plus/Minus Query 288888 TATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAG-ATTCGGTTTGCTT-AAATCCA 288945 |||||| || ||||| ||||| || | |||| ||| | | ||| ||| ||| ||| Sbjct 392 TATATCAGCCCTGTTGGTTGCAGCAATCACAATGATACCAGT--GTTCCCTTCAAAGCCA 335 Query 288946 TCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAA 289005 ||||| || | || |||||||| |||||||| | ||||||||| |||| Sbjct 334 TCCATTTCGGTAAGAAGCTGATTAAGGGTTTGTTCTCGCTCATCATTT---CCTC----- 283 Query 289006 TCACCCGAATC--GCTCCtttttt--tACCAACAGCATCAATTTCGTCAATGAAAATCAC 289061 |||| | || | |||| | | ||||||| ||||||||||| || | ||||| | Sbjct 282 -CACCT-ATTCCAGTTCCTCTCTGCCTACCAACTGCATCAATTTCATCCACGAAAACAAT 225 Query 289062 ACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACC 289121 || || | ||||| | || || || | || | || | |||||||||| ||| Sbjct 224 GCAAGGGGCATTTTCCTTGGCCTTTTTGAACAGGTCACGCACTCTAGATGCTCCAATACC 165 Query 289122 AACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGC 289180 |||| |||| || ||||| |||||| | || | | || | ||| | |||| ||||| | Sbjct 164 AACAAACATCTCAACAAACTCAGAACCTGAGA-TAGAGAAGAAAGGTACACCAGCTTCCC 106 Query 289181 CTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTC 289240 |||| | ||| | || || | ||||| || || || ||||| ||| | | ||||||| Sbjct 105 CTGCAATGGCCTTGGCTAGCAAAGTCTTCCCAGTCCCTGGTGGACCCACCAGAAGAACTC 46 Query 289241 CCTTTGG 289247 | || || Sbjct 45 CTTTAGG 39 >seq985 Length=9681 Score = 100 bits (110), Expect = 8e-16 Identities = 127/175 (73%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 233273 GCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATTT 233332 ||||| | | |||| | |||||| || ||||||||||||| ||||| ||||||||| | Sbjct 7330 GCACCATAACCAATGAGACAATCGCGCTCCATTTCACCAAGGCGCAGGCCACCATCACGT 7271 Query 233333 GACCTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACCCTGAGCACGATAATTA 233392 || | ||| | | || ||||||||||||| | ||||| | || ||| || Sbjct 7270 GAACGACCTTCAGTCGGCTGGCGAGTTAAAACAGCACGAGGACCGCGTGCCCGAGCATGC 7211 Query 233393 ATTTTATCTTTAACCATATGCTTCAGTCTCATATAATAACACGGACCAATAAATA 233447 |||||||| |||||||||||||||| | ||| ||| ||| || || |||| Sbjct 7210 ATTTTATCCATAACCATATGCTTCAGCTTTTGATAGTAAATCGGCCCCATGAATA 7156 >seq79 Length=34262 Score = 95.1 bits (104), Expect = 4e-14 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 354003 CTTAATTGCTGTGGCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGTTCGTC 354062 ||| || || | || ||||||||||| ||||| ||||| ||| | || || || || || Sbjct 19420 CTTGATAGCCGAAGCAAGAGCACCAAGAGAGTCGCGGTCAAGGTAGTTCGTCGGCTCATC 19479 Query 354063 AAGGATAAGAACGTGCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACCTTCTG 354122 ||| | |||| |||||| | || |||||| || || ||||| || ||||| |||||||| Sbjct 19480 AAGCACCAGAATGTGCGGGTTCAGCCACATGGCAGCGGCCAGCACCACCTTCACCTTCTG 19539 Query 354123 TCCGCCTGATAG 354134 || || || || Sbjct 19540 GCCACCAGACAG 19551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471147417514643