Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_021339.1 Length=51077 Score E Sequences producing significant alignments: (Bits) Value seq6008 192 2e-44 seq21255 178 4e-40 seq19878 178 4e-40 seq6617 165 3e-36 seq7953 145 2e-30 seq25480 129 2e-25 seq26503 104 8e-18 seq18790 86.0 2e-12 >seq6008 Length=2324 Score = 192 bits (212), Expect = 2e-44 Identities = 193/251 (77%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 40250 GAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAAGCGCTCGAAGAT 40309 |||||||||||||| |||||||||||||| |||||||| ||||||||||| ||||| | Sbjct 1035 GAAGTCGATGTCGAAGTCGGGCATGGACACCCGCTCGGGATTCAGGAAGCGTTCGAACAG 1094 Query 40310 GAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACC 40369 || || || ||||||||| |||||||||||| ||| ||||||| |||||||| || Sbjct 1095 CAGGTTGTACTGCAGCGGGTCCAGGTCGGTGATCTTGAGCGCGTAGGCCACCAGCGAGCC 1154 Query 40370 GGCCGCAGAGCCCCGCCCAGGGCCGACCCAGACCCCGTTCTCCTTCGCCCAGCGGATGAA 40429 ||| | || ||||| || || ||||| | ||||||||||||||||| | ||||| Sbjct 1155 GGCACCGGACCCCCGTCCCGGCCCGACAGGGCAGCCGTTCTCCTTCGCCCACTGAATGAA 1214 Query 40430 GTCCGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGATGATCATGTCGATCTCGTA 40489 ||| | |||| |||||||| ||||| ||||||| || ||| || | | ||| | Sbjct 1215 GTCGCCCACGATCAGGAAGTAGCCGGGGAAGCCCATCTTGAGGATGGTGCCCAGTTCGAA 1274 Query 40490 CTGGAGCTGCT 40500 || ||| ||| Sbjct 1275 CTCCAGCCGCT 1285 Score = 104 bits (114), Expect = 8e-18 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 39248 GCCTCGCTCGCGCGCTCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGAACCTCGGGCTT 39307 |||| |||| ||||||||| ||||| || || | | ||||| |||||| ||| Sbjct 30 GCCTTTCTCGGCCGCTCCCTTGCGGAAGATCTCGCGGTGTTCGGCCATCTCCTCGGCCTT 89 Query 39308 CTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTGACCCAGGGTGTACCCGGCCATGAC 39367 |||||||||||| |||||||| |||| |||||| ||| ||| |||| ||| ||| || Sbjct 90 CTTCTTGCCCATGGCCCGGCGCAGCATGTCGGCACCACCGAGGCTGTAGCCGCCCAGCAC 149 Query 39368 CTGTGCAACCTTCTGCACCTGCTCCTGGTA 39397 ||| || || | ||||||||||||||| Sbjct 150 CTGGGCGGTCTGCATCACCTGCTCCTGGTA 179 >seq21255 Length=623 Score = 178 bits (196), Expect = 4e-40 Identities = 215/291 (74%), Gaps = 4/291 (1%) Strand=Plus/Minus Query 40199 CCCGTACTTCCGGGTGACGTACTGGATGACCTCGCCACGACGCCGGTCATC--GAAGTCG 40256 ||||||||| || | ||||| | ||| |||||| | || || | ||| ||||||| Sbjct 360 CCCGTACTTGCGCGCAACGTAGTCGATCACCTCGTCGCGGCG--GTCCATGCAGAAGTCG 303 Query 40257 ATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAAGCGCTCGAAGATGAGCCCG 40316 ||||||| |||||||| |||||||| ||||||||||||||||||||||| | || | Sbjct 302 ATGTCGAAGTCGGGCATCGACACGCGTTCGGGGTTCAGGAAGCGCTCGAACAGCAGGTTG 243 Query 40317 TGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCA 40376 | | ||||||||| |||||||||||| || | | || |||||||| ||||| | Sbjct 242 TACGGCAGCGGGTCCAGGTCGGTGATCTTCAGCGCCCATGCCACCAGCGAGCCGGCACCC 183 Query 40377 GAGCCCCGCCCAGGGCCGACCCAGACCCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCG 40436 || || || || ||||||| | | || | | ||| |||| |||||||||| || Sbjct 182 GAACCACGGCCGGGGCCGATCGGAATGCCCTGGTTCTTGCCCCACTGGATGAAGTCGGCC 123 Query 40437 ACGACGAGGAAGTACGACGGGAACCCCATCTGGATGATCATGTCGATCTCG 40487 |||| |||||||| ||||| ||||||| |||||| ||| || |||| Sbjct 122 ACGATCAGGAAGTAGCCGGGGAAGCCCATCTTGATGATGGTGTTGAGCTCG 72 >seq19878 Length=680 Score = 178 bits (196), Expect = 4e-40 Identities = 208/279 (75%), Gaps = 4/279 (1%) Strand=Plus/Plus Query 40215 ACGTACTGGATGACCTCGCCACGACGCCGGTCATC--GAAGTCGATGTCGACATCGGGCA 40272 ||||| | ||| ||| | |||| |||| ||| |||||||| ||||| ||||||| Sbjct 107 ACGTAGTCGATCACCCGGTCACG--GCCGTCCATGCAGAAGTCGACGTCGAAGTCGGGCA 164 Query 40273 TGGACACGCGCTCGGGGTTCAGGAAGCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGA 40332 |||| || || || ||||| |||||||||||||| | || ||| |||||||||||| Sbjct 165 TGGAAACACGTTCAGGGTTGAGGAAGCGCTCGAACAGCAGGTCGTAGGCCAGCGGGTCGA 224 Query 40333 GGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCCCGCCCAGGGC 40392 | ||||||||| || || ||||| ||||||||||| || | || || || || |||| Sbjct 225 GATCGGTGATCTTCAGTACATAGGCCACCAGCGAACCAGCACCCGAACCGCGGCCCGGGC 284 Query 40393 CGACCCAGACCCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACG 40452 | ||| || |||| | ||| ||||| |||||||||| || | |||||||| Sbjct 285 CAACCGGTACATCGTTGTTCTTGGCCCACTTGATGAAGTCCATAACAATCAGGAAGTAAC 344 Query 40453 ACGGGAACCCCATCTGGATGATCATGTCGATCTCGTACT 40491 ||||| |||||||||||||| ||||| | |||| ||| Sbjct 345 CGGGGAAGCCCATCTGGATGATGATGTCCAGCTCGAACT 383 >seq6617 Length=2135 Score = 165 bits (182), Expect = 3e-36 Identities = 184/243 (76%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 40250 GAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAAGCGCTCGAAGAT 40309 |||||| | ||||| |||||||||||||| |||||||| || ||||| |||||||| | Sbjct 731 GAAGTCCACGTCGAAGTCGGGCATGGACACACGCTCGGGATTGAGGAAACGCTCGAACAG 672 Query 40310 GAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACC 40369 || || ||||||||||| ||||| |||||| ||| |||||||| |||||||| || Sbjct 671 CAGGTTGTATTCCAGCGGGTCCAGGTCCGTGATCTTGAGCACGTAGGCCACCAGCGAGCC 612 Query 40370 GGCCGCAGAGCCCCGCCCAGGGCCGACCCAGAC-CCCGTTCTCCTTCGCCCAGCGGATGA 40428 ||| | || || || || || || | | ||| ||||| ||| ||||| ||||| Sbjct 611 GGCGCCCGATCCGCGGCCCGGACCCA-CGGGACAGCCGTTGAGCTTGGCCCACTTGATGA 553 Query 40429 AGTCCGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGATGATCATGTCGATCTCGT 40488 |||| | |||| ||||||||| ||| || ||||||| || ||| || |||||||| Sbjct 552 AGTCACCCACGATGAGGAAGTAGCCCGGAAAGCCCATCTTGAGGATGGTGCCGATCTCGA 493 Query 40489 ACT 40491 ||| Sbjct 492 ACT 490 >seq7953 Length=1812 Score = 145 bits (160), Expect = 2e-30 Identities = 276/404 (68%), Gaps = 18/404 (4%) Strand=Plus/Plus Query 39005 CACGTCGGGCGGCAGGACCCGAAGGCCCATGCGCCGTGCCTCGCCGAGGTACGTGGCCAT 39064 |||||| ||||||| || ||||| | || || || ||| ||||| | | ||| Sbjct 1130 CACGTCCGGCGGCATCACGTTCAGGCCAAGGCCACGGGCTTCGTCGAGGAAGCCGACCAC 1189 Query 39065 CTTGT---TCTTGTC---GTCGCCCACCGAGGTGAGCGCAGCCGCCATGTACTCGGCCGG 39118 ||| | ||||||| |||| || | |||| || |||||| |||||| ||| Sbjct 1190 CTTCTCGGTCTTGTCCATGTCG------GACGACAGCGTCGCGGCCATGAACTCGGACGG 1243 Query 39119 GTAGTGCGTCTTCAACCACGCCGTGCGGTACGCGATGAGTCCGTACGCCGCCGAGTGCGC 39178 ||||||| |||||| ||| ||||| ||||||||| || |||||| || | ||||| Sbjct 1244 GTAGTGCTTCTTCAGCCAGGCCGTCTGGTACGCGACCAGCGAGTACGCGGCGGCGTGCGA 1303 Query 39179 CTTGTTGAAGGCGTAGCCAGCGAAGGGGACCAGCACGTCCCACACTGCCTGGA---TGGC 39235 |||||||||| ||||||| ||||| ||| || ||| | | | | | | ||| Sbjct 1304 CTTGTTGAAGCCGTAGCCCGCGAACTTCTCCATCAGGTCGAAGATTTCGTCGGCCTTGGG 1363 Query 39236 ACCGTCCGAGTAGCCTCGCTCGCGCGCTCCCTTCTGGAAGTTCACGAACTCCTTGGCCAG 39295 || || | ||| | || | || || | ||||| || || | |||||||| Sbjct 1364 GCCATC---GACGCCGCCCTTGGCTGCACCTTCGCGGAAGATCTCGCGGTGCTTGGCCAT 1420 Query 39296 AACCTCGGGCTTCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTGACCCAGGGTGTA 39355 | | ||| ||||||||||||||| ||||| ||||||||||| ||||| | ||| Sbjct 1421 TTCGGCCGGCACCTTCTTGCCCATCGCGCGGCGCAGCAGGTCGGCGCCGCCCAGCGAGTA 1480 Query 39356 CCCGGCCATGACCTGTGCAACCTTCTGCACCTGCTCCTGGTAGA 39399 ||| | | || ||| || | || | |||||||||||||||| Sbjct 1481 GCCGCCGACGATCTGCGCCATCTGCATGACCTGCTCCTGGTAGA 1524 >seq25480 Length=481 Score = 129 bits (142), Expect = 2e-25 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 40167 CCGTACGTCGCGATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTGACGTACTGGATG 40226 ||||| || |||||| ||| |||| |||||||| || | |||||| | |||| Sbjct 227 CCGTAGGTGATGATCTGGCTGACGCGGTCGCGGCCGTACTTGCGCGCGACGTAGTCGATG 168 Query 40227 ACCTCGCCACGACGCCGGTCATC--GAAGTCGATGTCGACATCGGGCATGGACACGCGCT 40284 || || | || || | ||| |||||||||||||| |||||||| |||||||| | Sbjct 167 ACTTCATCGCGGCG--GTCCATGCAGAAGTCGATGTCGAAGTCGGGCATCGACACGCGTT 110 Query 40285 CGGGGTTCAGGAAGCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCC 40344 | || || |||||||||||||| | ||||||| | ||||||||| |||||||||| | Sbjct 109 CCGGATTGAGGAAGCGCTCGAACAGCAGCCCGTACGGCAGCGGGTCCAGGTCGGTGACCT 50 Query 40345 CGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCCCGCCCAGGGCC 40393 || | | ||||||||||| || || | ||||| || || || || Sbjct 49 GCAGCGCCCACGCGACCAGCGAGCCCGCGCCCGAGCCGCGGCCGGGACC 1 >seq26503 Length=451 Score = 104 bits (114), Expect = 8e-18 Identities = 140/194 (72%), Gaps = 1/194 (1%) Strand=Plus/Minus Query 40266 TCGGGCATGGACACGCGCTCGGGGTTCAGGAAGCGCTCGAAGATGAGCCCGTGCTCCAGC 40325 |||||||| |||||||| || ||||| |||||||| ||||||| ||| | ||| Sbjct 447 TCGGGCATCGACACGCGTTCCGGGTTGAGGAAGCGTTCGAAGAGCAGCGAGAAACGTAGC 388 Query 40326 GGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCCCGC 40385 || |||| ||||| ||| || | |||||||||||||| || || | || || || Sbjct 387 GGATCGACATCGGTAATCGTCAGCGCATAGGCGACCAGCGATCCCGCACCCGAACCACGA 328 Query 40386 CCAGGGCCGACCCAGACCCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGG 40445 || ||||||||| | | | || ||| ||||| ||||||||| || |||| || Sbjct 327 CCGGGGCCGACCGGAATATCATGCTGCTTTGCCCATTTGATGAAGTCGGCAACGATAAGA 268 Query 40446 AAGTACGACGGGAA 40459 ||||| | |||||| Sbjct 267 AAGTA-GCCGGGAA 255 >seq18790 Length=730 Score = 86.0 bits (94), Expect = 2e-12 Identities = 87/111 (78%), Gaps = 2/111 (2%) Strand=Plus/Minus Query 39093 AGCGCAGCCGCCATGTACTCGGCCGGGTAGT-GCGTCTTCAACCACGCCGTGCGGTACGC 39151 |||| ||||||||| ||||||||||||||| |||| |||| ||| || || |||| Sbjct 125 AGCGTGGCCGCCATGAACTCGGCCGGGTAGTGGCGT-TTCAGCCATGCGGTCTGGTAGCT 67 Query 39152 GATGAGTCCGTACGCCGCCGAGTGCGCCTTGTTGAAGGCGTAGCCAGCGAA 39202 || || |||| || || | ||||| |||||||||| ||||||| ||||| Sbjct 66 GACCAGCGCGTAGGCGGCGGCGTGCGACTTGTTGAAGCCGTAGCCGGCGAA 16 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163255872749202