Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_021347.1 Length=142563 Score E Sequences producing significant alignments: (Bits) Value seq21255 123 2e-23 seq25480 102 7e-17 >seq21255 Length=623 Score = 123 bits (136), Expect = 2e-23 Identities = 237/346 (68%), Gaps = 5/346 (1%) Strand=Plus/Plus Query 104979 CGCGAGAAGTACTGGGCGCGTGTGGAGATGGAGGTCCGCACCATCACCAGCAAGAACTTC 105038 ||||| | |||| | ||| |||| | ||| || |||||||| || | | |||| Sbjct 43 CGCGAAGACTACTTCGAGCGCCTGGAATTCGAGCTCAACACCATCATCAAGATGGGCTTC 102 Query 105039 GCCGGGTACTTCAACGTCGTCGCCGACTACACCAAGTGGGCTAAGGACC---GCATGCTC 105095 |||| |||||| |||| ||||||| || | |||||| ||| ||| |||| | Sbjct 103 CCCGGCTACTTCCTGATCGTGGCCGACTTCATCCAGTGGGGCAAGAACCAGGGCATTCCG 162 Query 105096 GTCGGTCCCGGCCGTGGTTCGGCCGGTGGCTCGCTCGTCTCGTACCTGATGGACATCACC 105155 |||| |||||||||||||||| | |||||||| || | | | || | |||||| Sbjct 163 ATCGGCCCCGGCCGTGGTTCGGGTGCCGGCTCGCTGGTGGCATGGGCGCTGAAGATCACC 222 Query 105156 GAGCTCGACCCGATCAAGTACGACCTGATGTTCGAGCGGTTCATCTCGCCGGAGCGGAAG 105215 || || |||||| | |||| ||||| |||||||||| ||| | || || || | Sbjct 223 GACCTGGACCCGCTGCCGTACAACCTGCTGTTCGAGCGCTTCCTGAACCCCGAACGCGTG 282 Query 105216 AACTTCCCCGACATCGATCTCGACTTCCCGCA-GAAGCGTCGCGGCGAGGTCGTCGACTA 105274 | |||||| |||| ||||||| | ||| | | || |||| |||||| ||||||| Sbjct 283 TCGATGCCCGACTTCGACATCGACTT-CTGCATGGACCGCCGCGACGAGGTGATCGACTA 341 Query 105275 CATCGCCGACCGCTACGGCCACGACTGCGTCTGCTCGATCGGCACC 105320 | | || | ||||| | ||| ||||| || |||| |||| Sbjct 342 CGTTGCGCGCAAGTACGGGCGCGAACGCGTCAGCCAGATCATCACC 387 >seq25480 Length=481 Score = 102 bits (112), Expect = 7e-17 Identities = 158/223 (71%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 105099 GGTCCCGGCCGTGGTTCGGCCGGTGGCTCGCTCGTCTCGTACCTGATGGACATCACCGAG 105158 ||||||||||| || |||| || |||||||| ||| ||| | || | ||||||| Sbjct 1 GGTCCCGGCCGCGGCTCGGGCGCGGGCTCGCTGGTCGCGTGGGCGCTGCAGGTCACCGAC 60 Query 105159 CTCGACCCGATCAAGTACGACCTGATGTTCGAGCGGTTCATCTCGCCGGAGCGGAAGAAC 105218 || |||||| | ||||| ||| |||||||||| ||| || ||||| || | Sbjct 61 CTGGACCCGCTGCCGTACGGGCTGCTGTTCGAGCGCTTCCTCAATCCGGAACGCGTGTCG 120 Query 105219 TTCCCCGACATCGATCTCGACTTCCCGCA-GAAGCGTCGCGGCGAGGTCGTCGACTACAT 105277 | |||||| |||| ||||||| | ||| | | || |||| || ||| |||||||| | Sbjct 121 ATGCCCGACTTCGACATCGACTT-CTGCATGGACCGCCGCGATGAAGTCATCGACTACGT 179 Query 105278 CGCCGACCGCTACGGCCACGACTGCGTCTGCTCGATCGGCACC 105320 ||| | ||||||| |||| ||||| || |||| |||| Sbjct 180 CGCGCGCAAGTACGGCCGCGACCGCGTCAGCCAGATCATCACC 222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 455870995004120