Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_021531.1 Length=223989 Score E Sequences producing significant alignments: (Bits) Value seq23650 235 8e-57 seq6884 170 3e-37 seq10726 165 1e-35 seq29161 154 2e-32 seq10355 132 7e-26 seq10022 129 8e-25 seq776 125 1e-23 seq2111 116 5e-21 seq23186 113 6e-20 seq3205 87.8 3e-12 >seq23650 Length=538 Score = 235 bits (260), Expect = 8e-57 Identities = 238/310 (77%), Gaps = 0/310 (0%) Strand=Plus/Minus Query 98895 ATGAAACAGTATCAAGATTTAATGGCTGAAGTCTTTGCGAAAGGTACGCCGAAGAAAGAC 98954 ||||||||||||| || | ||| |||| | | | || ||||| ||||| || Sbjct 316 ATGAAACAGTATCTTGAACTGATGCAAAAAGTGCTCGATGAGGGCACGCCAAAGAACGAT 257 Query 98955 CGTACCGGTACAGGCACGCTTTCTATCTTCGGCCACCAGATGCGTTTCAACTTGCAAGAA 99014 || ||||| || || ||| | || || || |||||||||||||| |||||| |||| ||| Sbjct 256 CGCACCGGCACCGGTACGATCTCCATTTTTGGCCACCAGATGCGCTTCAACCTGCAGGAA 197 Query 99015 GGTTTCCCGCTGGTAACGACCAAGCGTTGCCACCTGCGCTCTATTATCCATGAACTGCTG 99074 || || |||||||| ||||||||||| ||||| | ||||| || || ||||||||||| Sbjct 196 GGCTTTCCGCTGGTCACGACCAAGCGCTGCCATTTACGCTCGATCATTCATGAACTGCTC 137 Query 99075 TGGTTCCTGAAAGGCGACACCAATATCCAGTACCTGAAAGATAATGGTGTAACCATTTGG 99134 ||||||||| | ||||||||||| ||| || ||| || ||| || |||||||| Sbjct 136 TGGTTCCTGCAGGGCGACACCAACATCGCTTATCTGCGCGAGAATAACGTCTCCATTTGG 77 Query 99135 GACGAATGGGCGGACAAAAATGGCGACCTCGGTCCGGTATACGGTAAGCAGTGGCGGGCA 99194 |||||||||||||| |||| ||||| || || || || || |||||||||||||| || Sbjct 76 GACGAATGGGCGGATGAAAACGGCGATCTGGGCCCAGTTTATGGTAAGCAGTGGCGCGCC 17 Query 99195 TGGACTGCGC 99204 ||| || ||| Sbjct 16 TGGCCTACGC 7 >seq6884 Length=2068 Score = 170 bits (188), Expect = 3e-37 Identities = 181/239 (76%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 98952 GACCGTACCGGTACAGGCACGCTTTCTATCTTCGGCCACCAGATGCGTTTCAACTTGCAA 99011 ||||| ||||| || ||||||| | |||||| |||||||| ||| || | | Sbjct 1179 GACCGCACCGGCACCGGCACGCGCAGCGTGTTCGGCTGGCAGATGCGCTTCGACCTCAAC 1238 Query 99012 GAAGGTTTCCCGCTGGTAACGACCAAGCGTTGCCACCTGCGCTCTATTATCCATGAACTG 99071 ||||| ||||||||||| || |||||| ||||||||||| || ||||| || ||| Sbjct 1239 GAAGGCTTCCCGCTGGTCACCACCAAGAAACTGCACCTGCGCTCGATCATCCACGAGCTG 1298 Query 99072 CTGTGGTTCCTGAAAGGCGACACCAATATCCAGTACCTGAAAGATAATGGTGTAACCATT 99131 |||||||||||||| ||||| ||||| ||| ||||| || || || || | ||| Sbjct 1299 CTGTGGTTCCTGAAGGGCGAAACCAACATCGCCTACCTCAAGGACAACAAGGTCAGCATC 1358 Query 99132 TGGGACGAATGGGCGGACAAAAATGGCGACCTCGGTCCGGTATACGGTAAGCAGTGGCG 99190 |||||||| ||||| ||| |||||||| || || ||||| ||||| ||||||||||| Sbjct 1359 TGGGACGAGTGGGCTGACGCGAATGGCGAACTGGGGCCGGTGTACGGCAAGCAGTGGCG 1417 Score = 105 bits (116), Expect = 1e-17 Identities = 211/311 (68%), Gaps = 4/311 (1%) Strand=Plus/Plus Query 99594 TGTCAGCTCTATCAGCGTAGTGCCGACGTGTTCTTGGGTGTGCCGTTTAACATCGCGTCG 99653 || |||||||||||||| || | |||| | ||| | || |||||||| |||||||| Sbjct 1602 TGCCAGCTCTATCAGCGCAGCGGCGACATCTTCCTCGGCGTGCCGTTCAACATCGCCAGC 1661 Query 99654 TATGCTCTACTGATTCACATGTTTGCACAGCAGGCGAATATGGCGGTGGGCGATTTCGTC 99713 || || || |||| |||||| | || ||| | || | | | || |||||||||| Sbjct 1662 TACGCGCTGCTGACGCACATGGTGGCGCAGGCGACGGGTCTCGGCGTCGGCGATTTCG-- 1719 Query 99714 TGGACCGGC--GGTGATGTGCATCTGTATTCTAACCATCTGGAACAGGCACGTACTCAGT 99771 || || || || || | ||| |||||||| ||||| || ||||| ||| || Sbjct 1720 TGCACACGCTGGGCGACGCGCACCTGTATTCGAACCACTACGACCAGGCGCGTGAACAAC 1779 Query 99772 TAGGTCGTACTCCGCGTGCGTTGCCTAAGCTGATTATCAAACGTAAGCCGGACTCTATCT 99831 | | || || || |||||||| |||||| |||| | || | | | | Sbjct 1780 TGGCGCGCGAACCCCGCGCGTTGCCGAAGCTGCACCTCAATCCCGAGGTCACCGATTTGT 1839 Query 99832 TCGACTATAAGTTCGAAGATTTTGATATCGAAGGCTACGACCCACACCCGGCTATTAAAG 99891 ||| || | ||||| || | || ||| | ||||||||||| || ||||| || || | Sbjct 1840 TCGGCTTCACCTTCGACGACATCGAGATCCATGGCTACGACCCGCATCCGGCGATCAAGG 1899 Query 99892 CACCGGTGGCG 99902 | ||||||||| Sbjct 1900 CGCCGGTGGCG 1910 >seq10726 Length=1340 Score = 165 bits (182), Expect = 1e-35 Identities = 162/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 98982 TTCGGCCACCAGATGCGTTTCAACTTGCAAGAAGGTTTCCCGCTGGTAACGACCAAGCGT 99041 |||||| |||||||| ||| || | | || || ||||||||||| || |||||| Sbjct 19 TTCGGCTGGCAGATGCGCTTCGACCTCAACGATGGCTTCCCGCTGGTCACCACCAAGAAA 78 Query 99042 TGCCACCTGCGCTCTATTATCCATGAACTGCTGTGGTTCCTGAAAGGCGACACCAATATC 99101 ||||||||||| || ||||| || ||||||||||||||||| ||||||||||||||| Sbjct 79 CTGCACCTGCGCTCGATCATCCACGAGCTGCTGTGGTTCCTGAAGGGCGACACCAATATC 138 Query 99102 CAGTACCTGAAAGATAATGGTGTAACCATTTGGGACGAATGGGCGGACAAAAATGGCGAC 99161 |||||||| || || || || |||||||| ||||| ||| || |||||| Sbjct 139 GGCTACCTGAAGGACAACCAGGTGCGGATCTGGGACGAGTGGGCCGACGCGAACGGCGAC 198 Query 99162 CTCGGTCCGGTATACGGTAAGCAGTGGCG 99190 ||||| ||||| ||||| ||||||||||| Sbjct 199 CTCGGCCCGGTCTACGGCAAGCAGTGGCG 227 >seq29161 Length=379 Score = 154 bits (170), Expect = 2e-32 Identities = 166/220 (75%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 98946 AAGAAAGACCGTACCGGTACAGGCACGCTTTCTATCTTCGGCCACCAGATGCGTTTCAAC 99005 ||| | ||||||||||| || || || | |||| |||||||||||| ||| || Sbjct 220 AAGCAGGACCGTACCGGCACCGGTACCTACAGCGTGTTCGCCCACCAGATGCGCTTCGAC 161 Query 99006 TTGCAAGAAGGTTTCCCGCTGGTAACGACCAAGCGTTGCCACCTGCGCTCTATTATCCAT 99065 || || ||||| || ||||| || |||||| |||||||| || || || || Sbjct 160 CTGGCCGACGGTTTTCCCCTGGTGACCACCAAGAAGTGCCACCTCAAGTCGATCATTCAC 101 Query 99066 GAACTGCTGTGGTTCCTGAAAGGCGACACCAATATCCAGTACCTGAAAGATAATGGTGTA 99125 || |||||||||||||| | ||||||||||| ||| |||||||||| || ||||| ||| Sbjct 100 GAGTTGCTGTGGTTCCTGCAGGGCGACACCAACATCAAGTACCTGAAGGACAATGGCGTA 41 Query 99126 ACCATTTGGGACGAATGGGCGGACAAAAATGGCGACCTCG 99165 ||| |||||||| ||||| ||| | || |||||||||| Sbjct 40 CGCATCTGGGACGAGTGGGCCGACGAGAACGGCGACCTCG 1 >seq10355 Length=1388 Score = 132 bits (146), Expect = 7e-26 Identities = 118/145 (81%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 98952 GACCGTACCGGTACAGGCACGCTTTCTATCTTCGGCCACCAGATGCGTTTC-AACTTGCA 99010 || || |||||||| ||||||| ||| |||||||| |||||||||||||| | ||| | Sbjct 1245 GATCGCACCGGTACGGGCACGCGCTCTGTCTTCGGCTACCAGATGCGTTTCGATCTTTC- 1303 Query 99011 AGAAGGTTTCCCGCTGGTAACGACCAAGCGTTGCCACCTGCGCTCTATTATCCATGAACT 99070 |||||| |||||| || | || |||||| || |||||||| || |||||||| || Sbjct 1304 AGAAGGCTTCCCGGTGCTGACCACCAAGAAGCTTCATCTGCGCTCCATCATCCATGAGCT 1363 Query 99071 GCTGTGGTTCCTGAAAGGCGACACC 99095 ||||||||||||||| ||||||||| Sbjct 1364 GCTGTGGTTCCTGAAGGGCGACACC 1388 >seq10022 Length=1431 Score = 129 bits (142), Expect = 8e-25 Identities = 225/320 (70%), Gaps = 8/320 (3%) Strand=Plus/Minus Query 99594 TGTCAGCTCTATCAGCGTAGTGCCGACGTGTTCTTGGGTGTGCCGTTTAACATCGCGTCG 99653 || ||||| || ||||| || |||||| | ||| |||| |||||||| |||||||| Sbjct 569 TGCCAGCTGTACCAGCGCAGCGCCGACATCTTCCTGGGCGTGCCGTTCAACATCGCCAGC 510 Query 99654 TATGCTCTACTGATTCACATGTTTGCACAGCAG-GCGAATATGGCGGTGGGCGATTTCGT 99712 || || || || | |||||| | || || ||| |||| ||| |||||||| ||| | Sbjct 509 TACGCCCTGCTCACGCACATGGTGGCGCAACAGTGCGACC-TGGAAGTGGGCGACTTCAT 451 Query 99713 CTGGACCGGCGGTGATGTGCATCTGTATTCTAACCATCTGGAACAGGCACGTACT-CAGT 99771 |||||||||||| ||| || | || |||||| || |||| | || ||| Sbjct 450 CTGGACCGGCGGCGATTGCCACATCTACAGCAACCATGCCGAGCAGG-TGGCGCTGCAGC 392 Query 99772 TAGGTCGTACTCCGCGT--GCGTTGCCTAAGCTGATTATCAAACGTAAGCCGGACTCTAT 99829 | |||| | | ||| |||| || | |||| ||| || ||||| | || || Sbjct 391 T--GTCGCGCGCGCCGTTCGCGTACCCCACGCTGCGCATCCTGCGCAAGCCCGCTTCCAT 334 Query 99830 CTTCGACTATAAGTTCGAAGATTTTGATATCGAAGGCTACGACCCACACCCGGCTATTAA 99889 ||||||||| ||||||| || || || | | |||||||| | |||||||| || || Sbjct 333 CTTCGACTACCAGTTCGAGGACTTCGAGGTGCAGGGCTACGAACACCACCCGGCCATCAA 274 Query 99890 AGCACCGGTGGCGATATGAG 99909 |||||||||||| |||||| Sbjct 273 GGCACCGGTGGCGGTATGAG 254 Score = 111 bits (122), Expect = 2e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 98980 TCTTCGGCCACCAGATGCGTTTCAACTTGCAAGAAGGTTTCCCGCTGGTAACGACCAAGC 99039 ||||||||||||||||||| ||| || || | ||||| || |||||||| ||||||||| Sbjct 985 TCTTCGGCCACCAGATGCGGTTCGACCTGAACGAAGGCTTTCCGCTGGTGACGACCAAGA 926 Query 99040 GTTGCCACCTGCGCTCTATTATCCATGAACTGCTGTGGTTCCTGAAAGGCGACACCAATA 99099 ||||| || || ||| ||| ||||||||||||| | ||| || | | Sbjct 925 AAGTGCACCTCAAATCCATCATCGTGGAATTGCTGTGGTTCCTCACCGGCTCCAGTGACA 866 Query 99100 TCCAGTACCTGAAAGATAATGGTGTAACCATTTGGGACGAATGGGCGGACAAAAATGGCG 99159 ||| | ||||| || || || || || ||||||||||||||| | | |||| Sbjct 865 ACCACTGGCTGAAGGAACGGGGCGTGACGATCTGGGACGAATGGGCGCGCGCGGACGGCG 806 Query 99160 ACCTCGGTCCGGTATACGGTAAGCAGTGGCG 99190 |||| || || || ||||| ||||||||| Sbjct 805 ACCTGGGCCCCGTCTACGGCGTGCAGTGGCG 775 >seq776 Length=11329 Score = 125 bits (138), Expect = 1e-23 Identities = 177/246 (72%), Gaps = 2/246 (1%) Strand=Plus/Plus Query 98946 AAGAAAGACCGTACCGGTACAGGCACGCTTTCTATCTTCGGCCACCAGATGCGTTTCAAC 99005 |||| ||||||||||| || ||||||| | ||||||||||||||||| ||| || Sbjct 10113 AAGACCGACCGTACCGGCACGGGCACGCGCAGCGTGTTCGGCCACCAGATGCGCTTCGAC 10172 Query 99006 TTGCAAGAAGGTTTCCCGCTGGTAACGACCAAG-CGTTGCCACCTGCGCTCTATTATCCA 99064 || ||||| || |||||||| || |||||| | || ||||| || || |||| Sbjct 10173 CTGTCCGAAGGCTTTCCGCTGGTCACCACCAAGAAGGTG-CACCTCAAGTCCATCATCCT 10231 Query 99065 TGAACTGCTGTGGTTCCTGAAAGGCGACACCAATATCCAGTACCTGAAAGATAATGGTGT 99124 |||||||||||||||||| ||||||| |||| | | | ||| | || || Sbjct 10232 GGAACTGCTGTGGTTCCTGCGCGGCGACAGCAATGTGCGCTGGCTGCAGGAGCGCGGCTG 10291 Query 99125 AACCATTTGGGACGAATGGGCGGACAAAAATGGCGACCTCGGTCCGGTATACGGTAAGCA 99184 ||||| |||||||||||||| | | | |||||||| || ||||| || || ||| Sbjct 10292 CACCATCTGGGACGAATGGGCCCGCGAGGACGGCGACCTGGGCCCGGTCTATGGCGTGCA 10351 Query 99185 GTGGCG 99190 ||||| Sbjct 10352 ATGGCG 10357 >seq2111 Length=5547 Score = 116 bits (128), Expect = 5e-21 Identities = 150/202 (74%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 98991 CAGATGCG-TTTCAACTTGCAAGAAGGTTTCCCGCTGGTAACGACCAAGC-GTTGCCACC 99048 |||||||| ||| | ||| | |||||||| || |||| || ||||| | ||| ||| Sbjct 2855 CAGATGCGCTTTGACCTTTCT-GAAGGTTTTCCTATGGTTACTACCAAAAAGCTGC-ACC 2912 Query 99049 TGCGCTCTATTATCCATGAACTGCTGTGGTTCCTGAAAGGCGACACCAATATCCAGTACC 99108 | ||||| ||| | |||||| ||||||| ||||||||||| || ||||| || Sbjct 2913 TTAAATCTATCATCTACGAACTGTTGTGGTTTCTGAAAGGCGATACGAATATTGGCTATT 2972 Query 99109 TGAAAGATAATGGTGTAACCATTTGGGACGAATGGGCGGACAAAAATGGCGACCTCGGTC 99168 | || || || || |||| || |||||||| ||||| || |||||||||| ||||||| Sbjct 2973 TAAATGAAAACGGAGTAAAAATCTGGGACGAGTGGGCAGATGAAAATGGCGAACTCGGTC 3032 Query 99169 CGGTATACGGTAAGCAGTGGCG 99190 |||| || || | || ||||| Sbjct 3033 CGGTTTATGGCCATCAATGGCG 3054 >seq23186 Length=554 Score = 113 bits (124), Expect = 6e-20 Identities = 205/295 (69%), Gaps = 4/295 (1%) Strand=Plus/Plus Query 87549 CTTATCTTCGCCACCGGCGAAGCGGGGTGTGGGAAAACGTTTATTTCCGCCGCATACGCT 87608 || || ||||||||||| ||||| |||||||||||||| | || || || | || Sbjct 258 CTGATTTTCGCCACCGGTGAAGCCGGGTGTGGGAAAACCTGGATAAGTGCAGCCAAAGCG 317 Query 87609 TGCGAACGTTTGCTGGCCAAAGATATCGAACGTATCATCGTCACTCGTCCGGTGCTCTCC 87668 || |||| | ||||| |||| ||||| |||||||| ||||| | Sbjct 318 GCAGAGGCTTTGATTCATAAAGACGTCGATAAGATCATTGTCACTCGCCCGGTATTGCAG 377 Query 87669 GCAGATGAAGATTTAGGCTTCCTGCCCGGCGACGTTGCCGAAAAATTCGCCCCGTACTTC 87728 || ||||||||| | |||||| ||||||| || || | || || || || ||||||||| Sbjct 378 GCCGATGAAGATCTCGGCTTCTTGCCCGGTGATATTTCGGAGAAGTTTGCGCCGTACTTC 437 Query 87729 CGCCCTGTTTATGACGTTCTTCAAAAACGTCTCGGTAGCCGC-TACCTGCAATACTGCCT 87787 || || ||||||||||| || || || | || || | | |||| ||||||| Sbjct 438 CGGCCCGTTTATGACGTGCTGGTGAAGCG-GTTGGGCGCATCTTTTATGCAGTACTGCC- 495 Query 87788 TAAGCCCGG-TATCGACAAAGTGGAGATTGCTCCTTTTGCGTACATGCGTGGCCG 87841 | |||||| |||| ||| || || ||||| || || || || ||||| || || Sbjct 496 TGCGCCCGGAAATCGGCAAGGTAGAAATTGCGCCGTTCGCCTATATGCGCGGACG 550 >seq3205 Length=3996 Score = 87.8 bits (96), Expect = 3e-12 Identities = 141/198 (71%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 98952 GACCGTACCGGTACAGGCACGCTTTCTATCTTCGGCCACCAGATGCGTTTCAA-CTTGCA 99010 |||||||| || ||||| || | |||| | || || || || |||||||| | || | Sbjct 2808 GACCGTACAGGCACAGGAACCCGTTCTGTATTTGGTCATCAAATGCGTTTTGATCTCTCT 2749 Query 99011 AGAAGGTTTCCCGCTGGTAACGACCAAGC--GTTGCCACCTGCGCTCTATTATCCATGAA 99068 | ||||||| || | | || || || ||| ||| | || |||||| | ||| Sbjct 2748 A-AAGGTTTTCCTTTACTCACCACAAAAAAAGTT--CACTTCCGTTCTATTGTGATTGAG 2692 Query 99069 CTGCTGTGGTTCCTGAAAGGCGACACCAATATCCAGTACCTGAAAGATAATGGTGTAACC 99128 | || ||||| | |||||||||||||| |||| || || ||||||||| ||| | Sbjct 2691 TTACTTTGGTTTTTAAAAGGCGACACCAACGTCCAATATCTAAAAGATAATAAAGTATCA 2632 Query 99129 ATTTGGGACGAATGGGCG 99146 |||||||| ||||||||| Sbjct 2631 ATTTGGGATGAATGGGCG 2614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716318443059560