Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_021534.1 Length=47552 Score E Sequences producing significant alignments: (Bits) Value seq1293 84.2 7e-12 >seq1293 Length=7953 Score = 84.2 bits (92), Expect = 7e-12 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 4895 CCAGATTTTATTTACCGCATTCTCTCTGGCAATCTTGCGACCAATTTCAGCGTCGAAATT 4954 |||||| || | || || ||||| | || || || || ||| | |||||||| || Sbjct 2191 CCAGATCTTCTGCACTGCGTTCTCGCGCGCGATGCGACGGCCGATTGCGGCGTCGAAGTT 2132 Query 4955 CTCTGGACTGGCGCAGGCGCTTTCTCCTGTCACGGTGAAGCCGTTTTTCAGCACCAAGAC 5014 ||| || |||||||| |||||||| || ||||| ||||||||||| |||| | || Sbjct 2131 CTCGGGGCTGGCGCACGCGCTTTCGCCCGTCACAGTGAAGCCGTTGCGCAGCGTGAGCAC 2072 Query 5015 GCAAAAGGTAAGAA 5028 ||| ||||| |||| Sbjct 2071 GCAGAAGGTCAGAA 2058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151980633198252