Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq14849 91.5 2e-13 seq14573 91.5 2e-13 seq35467 89.7 6e-13 seq25200 89.7 6e-13 seq24155 89.7 6e-13 seq35445 86.0 7e-12 seq14778 86.0 7e-12 >seq14849 Length=952 Score = 91.5 bits (100), Expect = 2e-13 Identities = 66/75 (88%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 9772 TGGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGA 9830 ||||| |||||||||| ||| |||||||||||| ||||| |||||| |||| |||||||| Sbjct 331 TGGGGGATTAGCTCAGCTGGCTAGAGCGCCTGCCTTGCACGCAGGAGGTCAACGGTTCGA 390 Query 9831 GTCCGCTATTCTCCA 9845 |||| ||||||||| Sbjct 391 CTCCGTTATTCTCCA 405 >seq14573 Length=973 Score = 91.5 bits (100), Expect = 2e-13 Identities = 66/75 (88%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 9772 TGGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGA 9830 ||||| |||||||||| ||| |||||||||||| ||||| |||||| |||| |||||||| Sbjct 653 TGGGGGATTAGCTCAGCTGGCTAGAGCGCCTGCCTTGCACGCAGGAGGTCAACGGTTCGA 594 Query 9831 GTCCGCTATTCTCCA 9845 |||| ||||||||| Sbjct 593 CTCCGTTATTCTCCA 579 >seq35467 Length=503 Score = 89.7 bits (98), Expect = 6e-13 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 9772 TGGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAG 9831 ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 183 TGGGGCCATAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCGTCGGTTCGAA 124 Query 9832 TCCG 9835 |||| Sbjct 123 TCCG 120 >seq25200 Length=489 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 9773 GGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAG 9831 |||| |||||||||| ||| |||||||||||| ||||| |||||| |||| |||||||| Sbjct 219 GGGGGATTAGCTCAGCTGGCTAGAGCGCCTGCCTTGCACGCAGGAGGTCATCGGTTCGAC 160 Query 9832 TCCGCTATTCTCCA 9845 |||| ||||||||| Sbjct 159 TCCGATATTCTCCA 146 >seq24155 Length=522 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 9773 GGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAG 9831 |||| |||||||||| ||| |||||||||||| ||||| |||||| |||| |||||||| Sbjct 224 GGGGGATTAGCTCAGCTGGCTAGAGCGCCTGCCTTGCACGCAGGAGGTCATCGGTTCGAC 165 Query 9832 TCCGCTATTCTCCA 9845 |||| ||||||||| Sbjct 164 TCCGATATTCTCCA 151 >seq35445 Length=682 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 9773 GGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAG 9831 ||||||||||||||| ||| |||||||||||| ||||| |||||| |||| ||||||| Sbjct 358 GGGGAATTAGCTCAGCTGGCTAGAGCGCCTGCCTTGCACGCAGGAGGTCAAGGGTTCGAC 417 Query 9832 TCCGCTATTCTCCA 9845 ||| ||||||||| Sbjct 418 TCCCTTATTCTCCA 431 >seq14778 Length=957 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 9773 GGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAG 9831 ||||||||||||||| ||| |||||| ||||| ||||| ||||| |||| |||||||| Sbjct 1 GGGGAATTAGCTCAGCTGGCTAGAGCACCTGCCTTGCACGCAGGGGGTCAACGGTTCGAA 60 Query 9832 TCCGCTATTCTCCA 9845 |||| ||||||||| Sbjct 61 TCCGTTATTCTCCA 74 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549378237119080