Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_021774.1 Length=29742 Score E Sequences producing significant alignments: (Bits) Value seq1131 284 2e-72 seq8149 178 2e-40 seq8333 118 2e-22 seq20278 80.6 5e-11 >seq1131 Length=8710 Score = 284 bits (314), Expect = 2e-72 Identities = 817/1238 (66%), Gaps = 39/1238 (3%) Strand=Plus/Plus Query 1505 ACGCCGAGACCGAGGCCGGTCGCGTCAATGCCGATGTATTCGACGTTGTATTTCTCAGTG 1564 ||||| | || || ||| | | ||| ||||||||||| |||||| | |||| ||| Sbjct 4153 ACGCCCTGCCCCAGCCCGCTGGTGTCGATGCCGATGTAGGTCACGTTGAACTTCTGCGTG 4212 Query 1565 AGCCTGCGGATGCCTTCTGCCTGCGCGGCAAAGTCCATGCCTTTCCACTGGTGACGCTCC 1624 | | ||||||| | ||||||||| | |||||| || || |||| || || | | Sbjct 4213 ATCGCGCGGATGGCCTCTGCCTGCTGCTCGAAGTCCGCCCCCTTGAACTGCTGCCGGTGC 4272 Query 1625 AGCATGCGAAACTTGCCACCCGAAACCACCGGCGGCGCGAGTACGACACATC-CGGCACT 1683 |||| || |||||||| |||| || |||||| || | || || || | | ||| Sbjct 4273 AGCAGCCGGAACTTGCCGCCCGGCGCCCGCGGCGGTGCAATCACCAC-CAGCGCCGCAGC 4331 Query 1684 GTCGCCAGTGTGGGACGGGTCGTAGCCAATCCAGACCGG---GCGCGAGCCGAACGGGTG 1740 ||||| ||||| || |||||||| || | ||| ||||| | ||| || |||| | Sbjct 4332 ATCGCCGGTGTGCGATGGGTCGTACCCCACCCACACCGGAAAGTGCG---CGTACGGCCG 4388 Query 1741 GTCGGCGAACGGGGCGAAGTCCTCCCATGTTTCCATCACGTCGACCATGCAGCGCTGCAG 1800 ||| ||||| | | ||| |||| | ||| ||| |||||||||| ||||| Sbjct 4389 CGTGGCAAACGGCTTGCAATCCGCCCACGCCTCCCAGCTGTCCACCATGCAGCCCTGCAT 4448 Query 1801 CTCCTCGAACGGGAATACCGATGCCTTATCGTCGACAAACTCGCACATAAACAGGTTCTT 1860 |||| || || ||| | || | ||||||| ||||||||||| ||||||| Sbjct 4449 TTCCTTGAGCGTGAACAGGCTAGCGCTGTCGTCGATGAACTCGCACATGTACAGGTTGGC 4508 Query 1861 AAAGTCCTCATCACTGTTTTCGCGTCTGAGCTGGTCGAGGTCGAACAGGGTGCAGCCACC 1920 || || || ||| |||| | |||| ||||| |||||||||| ||||||| | Sbjct 4509 GAACTCTTCCGGGCTGCTTTCTTCCCGCAGCTCGTCGATGTCGAACAGGTTGCAGCC-CA 4567 Query 1921 GGCAAG-GGCGTCCTCAATAGTGACAATCTGCCGCCACTGTCCGTCAGCGCAAAGAAGCC 1979 ||| | |||||||| || || || | | ||||||| | || || | | | | Sbjct 4568 GGCGTGCCGCGTCCTCGATCGTCACCACGTCGCGCCACTTGCGATCGGCCCCGCGGATGC 4627 Query 1980 CACCGGCGAGCGCGCTGTGACTGATGTCGATTTCGATGCGGTCAGCAGCACTGGC-GCGC 2038 | ||| ||||| ||| || | |||||| |||| || || || || ||| Sbjct 4628 CGCCGCGCAGCGCTGCGTGGCTCACGTCGATGGTGATGGCCTC----GCCCTTGCTGCGG 4683 Query 2039 CCCTTGTTGAACAGCTCGCCAGACCAGAAGGGATAAGCGCCGTGCGCCAGCGTGGAAGGT 2098 || |||||| | | ||| |||||| ||||| || | |||| || | || || Sbjct 4684 CCTTTGTTGCGCTCCGTGCCGTTCCAGAACGGATACGCCTCATGCGACATGGCCGACGGG 4743 Query 2099 GTCGAAAAGTAAGTTGAGCGCAGATGCTTCTGCGAGGCCATGCCCGATGCGACTTTGCGC 2158 || || ||||| || |||| |||||| |||| |||||| ||| || || ||| Sbjct 4744 GTGGAGAAGTACGTCTTGCGCCAATGCTTGTGCGTCGCCATGGCCGCGGCCACCTTGTTG 4803 Query 2159 AGCTTCTGAAAATTCGGGATCCAGAATATTTCATCGACATACAGGTCGCCGTTATGGCTT 2218 |||| |||| || | ||| || | ||||||| || | ||||||| | | | Sbjct 4804 AGCTGGCGAAAGCCCGACACCCAAAAGAACTCATCGAAGTAGAAGTCGCCGCTGCGCCCC 4863 Query 2219 TGTGCGGTGTTGGAATTGGTGCCGAGAAAAATCAGCTTTGCGCCGTTGTTGCCGATA--A 2276 || || || || | ||||||||| | ||| ||||| || ||||| ||| | | Sbjct 4864 TGCGCCGTCTTCGCATTGGTGCCCAAAAAGTGCAGCTCCGCACCGTT-----CGACAGCA 4918 Query 2277 CAATCGGGTCGCCGGTCAGGTCGACGTCAACCAGTCGCGCAAACTGGATGATGTATTCCC 2336 | || ||||||||| |||| || ||| | ||||| | ||||| | ||||| | Sbjct 4919 CGATAGGGTCGCCGCTCAGCTCCACGCCCACCAGCCCGGCAAAGGCCAGCATGTACGTCT 4978 Query 2337 GGAACACGTAAGCCTGCGTTTTACTGGCCGACAGAAAAATCTGGTTATGGCCGGTCTTGA 2396 |||| || ||||||| || || || || |||||||| || | || | ||| Sbjct 4979 TGAACTGGTGCGCCTGCGCCTTTGATGCAGAAAGGAAAATCTGATTGCGCCCCTCCGTGA 5038 Query 2397 GCGCGCGCAGCAGTGCCTCGCGGGAAAAGTAGAACGTCGCGCCAATCTGGCGGGATTTGA 2456 ||||| | ||| |||||||||| |||||| | || || || ||||| || || || | Sbjct 5039 TGGCGCGTATCAGCGCCTCGCGGGCAAAGTACCAAGTGGCCCCGATCTGCCGCGACTTCA 5098 Query 2457 GAATATCGCGAATACGGTGCGCCAGTCCTGCCCGGTACCACTGCAACTGGTAT-TCGAAA 2515 | | || | || | || | | | ||| |||||| | || || | ||| Sbjct 5099 GCAGCAGCCGCGTGCGCTCCGTCTGCGCCTCCC---ACCACTTC--GCGGCATACCCAAA 5153 Query 2516 G-ACTGGTCGAAGAAAATTTCTTCCAGCTTTGCGACAGCCTCATCGCTGAAAAAGTTCTT 2574 | ||| ||| ||| || || |||||| ||| ||| ||| |||| ||| Sbjct 5154 GTTCTGCTCGTGGAAGATCTCCAGCAGCTTCTCGATCTGCTCTTCGGTGAAGTGGTTGCG 5213 Query 2575 TTTCGGC---CTCTTACGCTCCCCTTTGTTACGGTTGGCAACGTTGGGGTTAAGGTCGGC 2631 |||||| | ||| || || | ||| || ||||| ||||||||| | |||| | Sbjct 5214 CTTCGGCGTGCGCTTGGGCGCCGC---GTTGCGCGCGGCAATGTTGGGGTTCAAGTCGCC 5270 Query 2632 CTCGTTGCCGGT-CTGGCT-GTAGCGGTTGACGCGCGCCAGTCGCTCAATCTGCCGCCCG 2689 || ||||| || || || |||||| | ||||||||| ||||| | |||||| || Sbjct 5271 TTCCTTGCCCGTGCT--CTGGTAGCGCTCCACGCGCGCCGTGCGCTCCAGCTGCCGGCCC 5328 Query 2690 AGCAGGTCAATCTCTTTGAAGTCGCCGCCTGACTTTTG 2727 |||||||| ||||| |||||||||||||| | ||| || Sbjct 5329 AGCAGGTCGATCTCCTTGAAGTCGCCGCCCGTCTTCTG 5366 >seq8149 Length=1767 Score = 178 bits (196), Expect = 2e-40 Identities = 358/525 (68%), Gaps = 12/525 (2%) Strand=Plus/Minus Query 14676 GCACTCGGCCTGCGTGCTTACATCGACCAGACTGTCGGCTGGCACAAAACCCTGTCTAAC 14735 || || |||||||| || |||||||||| ||||||||||| || ||||| ||| Sbjct 1625 GCCCTGGGCCTGCGCGCGCGCATCGACCAGGAGCAGGGCTGGCACAAGACGCTGTCCAAC 1566 Query 14736 GTT--GGTGTACAGGGCGTTACCGGCATCAGTGCCTCAGTGTTC--TGGGATTTGCAGGC 14791 || | ||| ||||||| |||||| | | | ||| | ||||| |||| Sbjct 1565 GTGCCGTTGTC--GGGCGTTCTGGGCATC--TCGCGCGATGTGCATTGGGACCTGCAAAG 1510 Query 14792 ATCCGGCACCGATGCTGACCTGCTCAACAAGGCCGGGGTTACGACGCTGGTACGCAAGGA 14851 ||| ||||| || | | | |||||| ||||||| | || |||||| | | | | Sbjct 1509 CCCCGATACCGAGGCCGGCATCCTCAACCAGGCCGGCATCACCACGCTGATCCAGAGCCA 1450 Query 14852 CGGTTTCCGTTTCTGGGGTAACCGCACCTGCTCAGATGACCCGCTTTTTCTGTTTGAGAA 14911 || ||| |||||||| ||||||||| | || | ||| || | || ||| Sbjct 1449 GGGCCACCGCTTCTGGGGCTCGCGCACCTGCACGGACAGCGAGCTGTTCCGCTTCGAGTC 1390 Query 14912 CTACACCCGTACCGCGCAGGTACTGGCCGACACGATGGCTGAAGCGCACATGTGGGCGGT 14971 | | || ||||||||||| ||||||||||| ||||| || ||||| | ||||| || Sbjct 1389 CAGCGTGCGCACCGCGCAGGTGCTGGCCGACACCATGGCCGAGGCGCATTTCTGGGCCGT 1330 Query 14972 CGATAAGCCCATTACCGCCACGCTCATTCGTGACATTGTTGACGGCATCAATGCCAAATT 15031 || |||||||| | ||| || | ||||| | || |||||||| |||| || Sbjct 1329 GGACAAGCCCATGCACCCCAGCCTGGTCAAGGACATCCTGGAAGGCATCAACACCAAGTT 1270 Query 15032 CCGCGAGCTGAAAACAAACGGCTACATCGTGGACGGTGAATGCTGGTTCGACGAGGAATC 15091 |||||| ||||| | ||||||||| ||||||| | ||||| |||||| || Sbjct 1269 CCGCGAACTGAAGGCCCTGGGCTACATCCTGGACGGCAAGGCCTGGTACGACGA--AACG 1212 Query 15092 G--AACGACAAGGAAACCCTGAAAGCCGGGAAACTGTATATCGACTACGACTATACGCCG 15149 | ||||| | | || || || ||||| || ||| | ||||||||||| ||||| Sbjct 1211 GTCAACGAGACCGCCACGCTCAAGGCCGGCAAGCTGGTGCTGGACTACGACTACACGCCC 1152 Query 15150 GTTCCGCCACTGGAGAGCCTGACCCTGCGCCAGCGTATCACCGAT 15194 || || || |||||| |||| | |||||||| ||||||||| Sbjct 1151 GTGCCTCCGCTGGAGGACCTGGGTTTTCGCCAGCGCATCACCGAT 1107 >seq8333 Length=1724 Score = 118 bits (130), Expect = 2e-22 Identities = 339/509 (67%), Gaps = 23/509 (5%) Strand=Plus/Minus Query 14675 TGCACTCGGCCTGCGTGCTTACATCGACCAGACTGTCGGCTGGCACAAAACCCTGTCTAA 14734 ||| || |||||||| || | | || ||| | ||||||||||| || | || || Sbjct 1166 TGCCCTGGGCCTGCGCGCCAAGCTGGATCAGGAGATTGGCTGGCACAAGTCCATTTCCAA 1107 Query 14735 CGTTGGTGTACAGGGCGTTACCGGCATCAGTGCCTCAGTGTTCTGGGATTTGCAG-GCAT 14793 | | | || | ||||| ||||||| | ||||||| || ||||| || Sbjct 1106 CATGGTGGTCAACGGCGTGGAAGGCATCACGCGCGATGTGTTCTTCGACCTGCAGAGC-- 1049 Query 14794 CCGGC-ACCGATGCTG---ACCTGCTCAACAAGGCCGGGGTTACGACGCTGGTACGCAAG 14849 ||||| | |||||| | ||||| || ||||| | | || |||||| | || Sbjct 1048 CCGGCCAGCGATGCGGGCTACCTGAACAGCAAGGAAG---TCACCACGCTGATTCGGCGC 992 Query 14850 GACGGTTTCCGTTTCTGGGGTAACCGCACCTGCTCAGATGAC--CCGCTTTTTCTG-TTT 14906 ||||| | ||| ||||||||| ||||||||| | | | | | ||| ||| Sbjct 991 GACGGATACCGCTTCTGGGGTTCGCGCACCTGCGAGGCCGCCGGCGGAAAGTTCGCCTTT 932 Query 14907 GAGAACTACACCCGTACCGCGCAGGTACTGGCCGACACGATGGCTGAAGCGCACAT-GTG 14965 ||| ||||||||| ||||| ||||| ||||||||||| || || ||||||||| | || Sbjct 931 GAGCCCTACACCCGCACCGCCCAGGTGCTGGCCGACACCATCGCAGAAGCGCACTTCGTC 872 Query 14966 GGCGGTCGATAAGCCCATTACCGCCACGCTCATTCGTGACATTGTTGACGGCATCAATGC 15025 | |||| |||||||| | || |||| | || ||||| | | | |||||| Sbjct 871 TTC-ATCGACAAGCCCATGCACCCCTCGCTGGTGCGCGACATGCTGGGCTACATCAACAG 813 Query 15026 CAAATTCCGCGAGCTGAAAACAAACGGCTA---CATCGTGGACGGTGAATGC-TGGTTCG 15081 | |||||||| ||| | |||||| ||||| || | ||||| | |||| Sbjct 812 CCGCTTCCGCGATCTGGTCAATGGCGGCTATCTCATCGGGGCC----AATGCGTACTTCG 757 Query 15082 ACGAGGAATCGAACGACAAGGAAACCCTGAAAGCCGGGAAACTGTATATCGACTACGACT 15141 || || ||||| ||||||| |||| | ||| ||| | ||| |||||||| Sbjct 756 ACCCCGATCTGAACGGCAAGGAAGACCTGGCCGTCGGCCGCCTGCAGATCAGCTACGACT 697 Query 15142 ATACGCCGGTTCCGCCACTGGAGAGCCTG 15170 | |||||||| ||||| ||||||| |||| Sbjct 696 ACACGCCGGTGCCGCCGCTGGAGAACCTG 668 >seq20278 Length=663 Score = 80.6 bits (88), Expect = 5e-11 Identities = 44/44 (100%), Gaps = 0/44 (0%) Strand=Plus/Minus Query 21331 GACACCATCCCTGTCTTCCCCCACATGATGTGGGGGtttttttt 21374 |||||||||||||||||||||||||||||||||||||||||||| Sbjct 175 GACACCATCCCTGTCTTCCCCCACATGATGTGGGGGTTTTTTTT 132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 95012685282672