Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_021781.2 Length=135281 Score E Sequences producing significant alignments: (Bits) Value seq4033 208 7e-49 seq23727 145 7e-30 seq29118 104 2e-17 >seq4033 Length=3286 Score = 208 bits (230), Expect = 7e-49 Identities = 412/611 (67%), Gaps = 0/611 (0%) Strand=Plus/Minus Query 99502 AGTGGTATCGTAAACTGGAACGATATTCGGTATCCGTCTTTCTATCGAGCTTACAAAGAG 99561 || || ||| | |||||||| || || | ||| ||||| |||||||| || ||||| ||| Sbjct 629 AGCGGGATCCTGAACTGGAATGACATCCCGTACCCGTCCTTCTATCGCGCCTACAAGGAG 570 Query 99562 TTAACTACAAATTACTGGTTGCCTGATGAGGTAGATATGAAGAGCGATGCCAAACAGTAC 99621 | | || || | |||| | || || ||||| || |||||| |||||| |||||| Sbjct 569 CTGTCGACCAACTTCTGGATCCCCGACGAGGTCGACATGAAGGCCGATGCGCGCCAGTAC 510 Query 99622 AACCACTTATCCGAAGAAGAGAAGTATGCGTTTGACTCCATTATCGGACTTTTAGCTACA 99681 | | | |||| || ||| | || | ||||| || ||||| || | || || Sbjct 509 GGCGAGCTGTCCGGGCGCGAAAAGAACGCCTACGACTCGATCATCGGCCTGCTGGCCACG 450 Query 99682 CTTGACTCACCCCAAACACGTTTTATTTATAACATTGCAGAGTATGTCAGTGATGCCTCC 99741 || |||||||| || || || || || || ||| | || ||||| ||| || | || Sbjct 449 CTCGACTCACCGCAGACGCGCTTCATCTACAACGTGGCCGAGTACATCACCGACCCGGCC 390 Query 99742 GTTCATGCTATTACAGCTATCATTGCACAACAAGAAGCTATTCATAATGAGAGTTATTCT 99801 | ||||| | | | || ||||| | || || |||| || || || |||||||| Sbjct 389 GCGCATGCCAATGCCGCGATCATCGGCCAGCAGGAAGTGATCCACAACGAGAGTTACAGC 330 Query 99802 TATGTACTTGCTTCTATTACTAACTTACAAGAGCAGAATCGAGTATTTGAGGAAGCTAGA 99861 ||||| || || || || || || | | | ||||| || |||||||| || | Sbjct 329 TATGTGCTGGCCTCGATCACCGACCTGCCGAACCAGAACCGCGTATTTGAACTGGCGCGC 270 Query 99862 ACACACCCTACGATTATTAAACGTAATGCACCTATTATGAAGTCTTATGACGATTTCATG 99921 || || || || || || || || || || || || ||| | |||||||| |||||| Sbjct 269 ACCCATCCGACCATCATCAAGCGCAACGCGCCGATCATGGGCGCGTATGACGACTTCATG 210 Query 99922 AATAACAAAACACCTGAGAATATGGTAAAAGCTTTAGTACAGTCATCTATCTTAGAGGGT 99981 | || || | |||| || | || | || | ||||| || ||| | ||||| Sbjct 209 CGCGAGAAGACCGCCGAGACCCTGTTGAAGTCGTTGATCCAGTCCTCGATCCTGGAGGGC 150 Query 99982 ATTAATTTCTACAGCGGTTTTGCTTACTTCTACAACCTCGTTCGTCAAAACAAGATGACG 100041 || || ||||| ||| ||||| |||||||||||| | || || || ||| ||||| Sbjct 149 ATCAACTTCTATTCCGGATTTGCGTACTTCTACAACATGGTGCGGCAGAACCGCATGACC 90 Query 100042 GGGACAGGTAAAATCATTAGCTTCATTAATCGTGATGAATTAGCCCATTCGAAATTTATN 100101 || || || || ||||| || ||||| || || || ||| | |||||| | || || || Sbjct 89 GGCACCGGCAAGATCATCAGTTTCATCAACCGCGACGAACTGGCCCATACCAAGTTCATC 30 Query 100102 NNNGAGCTAAT 100112 ||||| || Sbjct 29 AGCGAGCTGAT 19 >seq23727 Length=536 Score = 145 bits (160), Expect = 7e-30 Identities = 315/473 (67%), Gaps = 0/473 (0%) Strand=Plus/Minus Query 99640 GAGAAGTATGCGTTTGACTCCATTATCGGACTTTTAGCTACACTTGACTCACCCCAAACA 99699 |||||| |||| | ||| | || ||||| || | || || || || ||||| || || Sbjct 491 GAGAAGAATGCCTACGACGCGATCATCGGCCTGCTGGCCACGCTCGATTCACCGCAGACG 432 Query 99700 CGTTTTATTTATAACATTGCAGAGTATGTCAGTGATGCCTCCGTTCATGCTATTACAGCT 99759 || || || || ||| | || ||||| ||| ||| | ||| ||||| | | || Sbjct 431 CGCTTCATCTACAACGTGGCCGAGTACATCACCGATCCGGCCGCGCATGCCAACGCCGCG 372 Query 99760 ATCATTGCACAACAAGAAGCTATTCATAATGAGAGTTATTCTTATGTACTTGCTTCTATT 99819 ||||| | || || |||| || || || ||||| || || || || || || || Sbjct 371 ATCATCGGCCAGCAGGAAGTGATCCACAACGAGAGCTACAGCTACGTGCTGGCCTCGATC 312 Query 99820 ACTAACTTACAAGAGCAGAATCGAGTATTTGAGGAAGCTAGAACACACCCTACGATTATT 99879 || || | | | ||||| || | || ||| || | || ||||| || || || Sbjct 311 ACCGACCTGCCGAACCAGAACCGCATTTTCGAGATCGCCCGTACCCACCCGACCATCATC 252 Query 99880 AAACGTAATGCACCTATTATGAAGTCTTATGACGATTTCATGAATAACAAAACACCTGAG 99939 || || || || || || ||| | ||||||||||||||| | || || | ||| Sbjct 251 AAGCGCAACGCGCCGATCATGGGTGCGTATGACGATTTCATGCGCGAGAAGACTGCCGAG 192 Query 99940 AATATGGTAAAAGCTTTAGTACAGTCATCTATCTTAGAGGGTATTAATTTCTACAGCGGT 99999 | || | | | || | ||||| || ||| | || || || || ||||| ||| Sbjct 191 ACGCTGCTCAGGTCGTTGATCCAGTCCTCGATCCTGGAAGGCATCAACTTCTATTCCGGC 132 Query 100000 TTTGCTTACTTCTACAACCTCGTTCGTCAAAACAAGATGACGGGGACAGGTAAAATCATT 100059 || || |||||||||||||| || || || ||| ||||| || || || || ||||| Sbjct 131 TTCGCCTACTTCTACAACCTGGTGCGGCAGAACCGCATGACCGGCACCGGCAAGATCATC 72 Query 100060 AGCTTCATTAATCGTGATGAATTAGCCCATTCGAAATTTATNNNNGAGCTAAT 100112 |||||||| || |||||||| | |||||| | || || || ||||| || Sbjct 71 AGCTTCATCAACCGTGATGAGCTGGCCCATACCAAGTTCATCAGCGAGCTGAT 19 >seq29118 Length=380 Score = 104 bits (114), Expect = 2e-17 Identities = 240/359 (67%), Gaps = 2/359 (1%) Strand=Plus/Plus Query 100105 GAGCTAATTAGAGCTATTGTAGGGGAAAACCCTGAACTACAAACAGATGAACTAAATGAC 100164 ||||| || | || || | || || ||||| || || || || | || || | ||| Sbjct 17 GAGCTGATCCGCGCCATCATCGGCGAGAACCCGGAGCTGCAGACCAACGAGCTGACCGAC 76 Query 100165 TACGTGTACGCTTCTTTTAGACATGCCGTAGAGCTAGAACAAGCGTGGTCTAGTGAGGTA 100224 || ||| || | || ||| ||| | || || ||| |||||| || ||| Sbjct 77 TATGTGCACCAGGCGTTCGAACACGCCATCGAACTGGAAACCCAGTGGTCATCGGAAGTA 136 Query 100225 CTACAAGGCATTGAAGGAATTGATGTGGAAGAAATGTTAGACTATGTAAAATATCGTGCT 100284 || | ||||| || || || |||||||| |||||| ||| || || || || || Sbjct 137 CTGGACGGCATCGACGGCATCGATGTGGAGGAAATGACGCGCTACGTGAAGTACCGCGCC 196 Query 100285 AATAAAATGTTAGGGATGTTAGGTCTTCAACCAATGTATCAAGGTCAC-ACAGAAAATTC 100343 || || ||| || ||| | || | | | |||| || | ||| || || || Sbjct 197 AACAAGATGGCCGGCATGCTCGGCATCGAGCGCCTGTA-CAGCGACACCACCGACAACGT 255 Query 100344 TATGACATGGATTAAAGCTTACGCCGATAACTTTACAGAAACAAAAACCGACTTTTTCGA 100403 ||| | ||||| || || ||||| || ||||| || || || || |||||||| ||||| Sbjct 256 GATGCCGTGGATCAAGGCCTACGCTGACAACTTCACCGAGACCAAGACCGACTTCTTCGA 315 Query 100404 AATGCGTAATTCTAGTTACAAGAAAACAAATTTAGACAATGGGTTCGATGACTTATGAG 100462 ||||| ||| | ||||||||||| || || | ||||| || ||||| ||| | |||| Sbjct 316 GATGCGCAATGCAAGTTACAAGAAGACCAACGTCGACAACGGCTTCGACGACCTCTGAG 374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432586951747918