Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_021782.1 Length=72098 Score E Sequences producing significant alignments: (Bits) Value seq1653 118 5e-22 seq21350 105 3e-18 >seq1653 Length=6607 Score = 118 bits (130), Expect = 5e-22 Identities = 173/242 (71%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 7886 CTGTACCTGCAAGAGCTACTGAAGGTTCTGCTGGTGTAGACTTACGCACTAACACCTCTG 7945 || ||||| || || || | |||||| || ||| |||| ||||| | | | || Sbjct 3024 CTTTACCTTCATATGCAACAGCAGGTTCAGCGGGTTTAGATTTACGTGCCTGCGTCGATG 2965 Query 7946 AACCATTTGA-ATTGAAACCAGGTGAAACCAAGTTAGTTGAAACTGGTTTGGCTATTCAT 8004 || || |||| |||||| ||||| |||| ||||| |||| ||| |||| ||| || Sbjct 2964 AAGCAATTGATATTGAA-CCAGGACAAACTGTTTTAGTGAAAACAGGTATGGCAATTTAT 2906 Query 8005 CTGGATGATGTGAAGTATGCAGCAATGATTCTTCCTCGTTCAGGTCTGGGCCATAAGCAT 8064 | ||||||| || | ||| | | ||| | || ||||||||| | || ||||| || Sbjct 2905 ATTCATGATGTAAATTTTGCTGGTTTAATTTTACCGCGTTCAGGTTTAGGTCATAAACAC 2846 Query 8065 GGTGTAGTGCTTGGGAACCTTACTGGTCTGATTGATTCAGACTATCAGGGTGAACTTATG 8124 ||| | |||||||| || | |||| ||||||||||||| ||||| |||||| | ||| Sbjct 2845 GGTATCGTGCTTGGTAATTTAGTTGGTTTGATTGATTCAGATTATCAAGGTGAATTGATG 2786 Query 8125 GT 8126 || Sbjct 2785 GT 2784 >seq21350 Length=620 Score = 105 bits (116), Expect = 3e-18 Identities = 141/193 (73%), Gaps = 6/193 (3%) Strand=Plus/Plus Query 8030 TGATTCTTCCTCGTTCAGGTCTGGGCCATAAGCATGGTGTAGTGCTTGGGAACCTTACTG 8089 |||| || || ||||| || |||||||||||||||||| | ||||| || || || | Sbjct 5 TGATCCTGCCGCGTTCCGGCCTGGGCCATAAGCATGGTATCGTGCTGGGCAATCTGGTGG 64 Query 8090 GTCTGATTGATTCAGACTATCAGGGTGAACTTATGGTAAGCCTCTGGAATCGCTCTACAG 8149 | ||||| ||||| |||||||||||| | || ||||| | ||||||| || | ||| Sbjct 65 GACTGATCGATTCTGACTATCAGGGTCAGCTGATGGTCTCCGTCTGGAACCG-TGGCCAG 123 Query 8150 ---AGCCTTTTACTGTTAACCCTGGTGACCGTATTGCTCAGATGGTAATCGTGCCTGTAA 8206 ||| || || || | ||||| || ||| | || ||||||||| |||| || || Sbjct 124 GACAGC--TTCACCATTCAACCTGGCGAGCGTGTCGCCCAGATGGTATTCGTCCCGGTGG 181 Query 8207 TGCAGCCTGAGTT 8219 | ||| |||| || Sbjct 182 TACAGGCTGAATT 194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 230488924712761