Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_021804.1 Length=28760 Score E Sequences producing significant alignments: (Bits) Value seq11180 91.5 3e-14 >seq11180 Length=1282 Score = 91.5 bits (100), Expect = 3e-14 Identities = 124/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 26496 TTAGCTAAAGAACTGCAGGTGCCTATAATTGCTTTATGTCAATTATCTAGGGCTGTAGAA 26555 |||||||||||| || | || || ||||||| | | || | || | || || ||| Sbjct 923 TTAGCTAAAGAATTGAACGTTCCGGTAATTGCACTTTCGCAGCTTTCCCGTGCCGTTGAA 982 Query 26556 ACTCGTGGTGGTTCTAAACGTCCTTTGTTATCAGATTTGCGTGAATCAGGTGCAATAGAG 26615 || |||||| |||| | |||||| | || ||| | | ||||| || || || ||| Sbjct 983 ACCCGTGGTTCGAGTAAAAGGCCTTTGCTTTCGGATCTTAGGGAATCGGGAGCTATCGAG 1042 Query 26616 CAGGATGCAGATATAGTAGAGTTTATTTATAGACCAGATTATTATAAAATAGA 26668 |||||||| ||||| || |||||| ||| | || || ||||||||||| || Sbjct 1043 CAGGATGCCGATATCGTTTCGTTTATCTATCGTCCGGAATATTATAAAATTGA 1095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 91871611455996