Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_021867.1 Length=46978 Score E Sequences producing significant alignments: (Bits) Value seq2084 383 5e-102 seq2995 253 6e-63 seq22003 91.5 4e-14 seq21335 89.7 2e-13 >seq2084 Length=5597 Score = 383 bits (424), Expect = 5e-102 Identities = 394/511 (77%), Gaps = 3/511 (1%) Strand=Plus/Minus Query 35343 TGTGGTTGCTCACTTTCACTTAGTAATGG-TATTTCTGCATTGTACGGATTCTTTGCTGG 35401 |||||| || ||||| ||| | ||||||| ||| |||||| | |||||| | ||||| || Sbjct 2372 TGTGGTAGCGCACTTCCACCTGGTAATGGGTATCTCTGCACTTTACGGAATGTTTGCCGG 2313 Query 35402 TGTTTACCACTGGTTTCCAAAAATGTTCGGGCGTATGATGAATAAAAATTTAGGTTATAT 35461 | ||||||||||| |||| ||||||||| | ||| | || ||||| ||||||||||| Sbjct 2312 AATCTACCACTGGTTCCCAAGAATGTTCGGTAGAATGCTAAACAAAAACTTAGGTTATAT 2253 Query 35462 TCACTTTTGGATTACTGCAATTTGTGCTTATGGTGTTTTCTATCCAATGCACTTTATAGG 35521 |||||| ||| | ||||| || |||||||| || || |||| |||||||||||||| || Sbjct 2252 TCACTTCTGGGTAACTGCTATCTGTGCTTACGGAGTATTCTTCCCAATGCACTTTATTGG 2193 Query 35522 GATGGCTGGATTACCACGTCGTTACTACACAAATACTAACTTTCCA-TTATTTGATGATT 35580 ||||| || | ||| | |||||||| ||||| || | |||||| ||||||||||| | Sbjct 2192 TATGGCAGGTCTTCCAAGACGTTACTATACAAACAC-AGCTTTCCCGTTATTTGATGACT 2134 Query 35581 TAGCTGATGTGAATAAAGTAATTACTACTTTTGCTTTGATTGGAGCAGCTTTCCAATTGG 35640 | |||| || | | |||||| |||||||| |||||| ||||||||| |||| Sbjct 2133 TGCAAAATGTAAACGTATTGATTACTGTATTTGCTTTAGTTGGAGGAGCTTTCCAGTTGG 2074 Query 35641 TATTTATGTGGAATTTCTTTACTAGTATTTTTTACGGaaaaaaaGCTGTGCAAAATCCAT 35700 |||| | ||||| ||||| ||||| || |||||||| ||||| || ||||| |||| Sbjct 2073 TATTCCTTTGGAACTTCTTCGTAAGTATCTTCTACGGAAAGAAAGCAGTTCAAAACCCAT 2014 Query 35701 GGAGGTCTAATACTCTTGAGTGGACTACACCAGTGGAACATGTACATGGAAACTGGCCAG 35760 |||| || |||||| | || ||||| | || || ||||| | || ||||||||||| | Sbjct 2013 GGAGATCCAATACTTTGGAATGGACAGCTCCGGTAGAACACATTCACGGAAACTGGCCTG 1954 Query 35761 GTGCTATCCCAGAAGTTTATAGATGGCCTTATGATTACAGTAAACCAGGGCATGACGAAG 35820 | | | || |||||| | |||||||| || |||||||| || || || ||| || | Sbjct 1953 GAGAACTTCCTGAAGTTCACAGATGGCCATACGATTACAGCAAGCCTGGCTTTGATGATG 1894 Query 35821 ATTTTGTTCCTCAAACTGTGCCAATGAAAGA 35851 |||| ||||| ||||| |||||||||||||| Sbjct 1893 ATTTCGTTCCGCAAACAGTGCCAATGAAAGA 1863 >seq2995 Length=4221 Score = 253 bits (280), Expect = 6e-63 Identities = 313/423 (74%), Gaps = 4/423 (1%) Strand=Plus/Plus Query 39932 TATTTGCCATAACAGAAAATTACTAATGCGGTGTTCGCCACTTGTTCTTATTACTAAATC 39991 ||| ||||| | | ||||| || || | ||||||||||| |||||||||| |||||| Sbjct 1 TATCTGCCAAAGTAAGAAATTGCTGATTCTATGTTCGCCACTGGTTCTTATTAATAAATC 60 Query 39992 TACATCAGGTAGATTATGCGTGTAAAGATGCTTATTTAATATTGAATCGTCAATAGAATC 40051 || || |||| ||| |||||||||||||||| ||| | ||||| |||||||||| || Sbjct 61 AACGTCTGGTAAATTTTGCGTGTAAAGATGCTGATTAATAATTGATTCGTCAATAGCGTC 120 Query 40052 TATTGAAATTATATTATTTTTAACTTTATCACTAATTATTTTAACAGCATTTATGATTTC 40111 ||||||||||||||||||||||||| || || || | || | || | |||||| Sbjct 121 TATTGAAATTATATTATTTTTAACTATACTGCTTATGCTCTTTATTGCTGAGACGATTTC 180 Query 40112 TTCTCTCGATCCGTAGCTTAATGCTAAGGTAAGGGTCATTCTGGTATTGTTTTTTGTTTG 40171 || | || |||||||||| || | || || ||||||||||| |||| |||||||| Sbjct 181 CTCACGAGAACCGTAGCTTAGCGCAAGAGTCAGCGTCATTCTGGTGTTGTCTTTTGTTTT 240 Query 40172 CGCTATTA-CTTCGAGCAATTCTTTTTGAACTGATTTTGGTAAATTATCAAGGTTTCCTA 40230 | || | || ||| |||||||||||| | || || || || |||| || |||| Sbjct 241 GGAAATGACCTGCGA-TAATTCTTTTTGAGCAGAAGCCGGCAATTTTTCAAAATTACCTA 299 Query 40231 TCGAATTTAACTTTATGTTGTTTTTTACTAAG-GTTGCTAAttttttttttAAGGAATTA 40289 | | ||| | ||||| ||| || | |||| ||| | | |||||||| || || Sbjct 300 TAGTATTGAGTTTTATATTG-TTCTCGGTAAGTGTTTTAAGCTCGTTTTTTAATGAGTTT 358 Query 40290 ATTAGTATTTTCATTAACAAATCGACTTCTAATTTTGGACGGTTCCAATTTTCGGTCGAA 40349 || || | ||||||||| || ||||| | ||||||||||||||| |||||||| ||| Sbjct 359 ATAAGAAGTTTCATTAAAGTGTCAACTTCCAGTTTTGGACGGTTCCAGTTTTCGGTAGAA 418 Query 40350 AAA 40352 ||| Sbjct 419 AAA 421 >seq22003 Length=596 Score = 91.5 bits (100), Expect = 4e-14 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 39903 ACATCTGTAAAATAAAATTCTGCGTAAGCTATTTGCCATAACAGAAAATTACTAATGCGG 39962 ||||| ||||| |||| ||| ||||| || |||||||| | || ||| ||||| |||||| Sbjct 187 ACATCAGTAAAGTAAAGTTCGGCGTAGGCGATTTGCCAAAGCAAAAAGTTACTTATGCGG 128 Query 39963 TGTTCGCCACTTGTTCTTATTACTAAATCTACA 39995 ||||| || | ||| |||||||| ||||| ||| Sbjct 127 TGTTCTCCCCCTGTCCTTATTACCAAATCCACA 95 >seq21335 Length=620 Score = 89.7 bits (98), Expect = 2e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 39903 ACATCTGTAAAATAAAATTCTGCGTAAGCTATTTGCCATAACAGAAAATTACTAATGCGG 39962 ||||||||||| |||| ||| ||||| || |||||||| | || ||| ||||| ||||| Sbjct 353 ACATCTGTAAAGTAAAGTTCGGCGTAGGCAATTTGCCACAGCAAAAAGTTACTGATGCGA 294 Query 39963 TGTTCGCCACTTGTTCTTATTACTAAATCTAC 39994 ||||| || | ||| || ||||||||||| || Sbjct 293 TGTTCTCCCCCTGTCCTAATTACTAAATCCAC 262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150144608374920