Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq25614 123 2e-23 seq14623 123 2e-23 seq32362 122 8e-23 seq20474 109 5e-19 seq19645 109 5e-19 seq31848 107 2e-18 seq451 102 7e-17 seq28136 98.7 9e-16 seq7414 98.7 9e-16 seq1997 98.7 9e-16 seq27836 93.3 4e-14 >seq25614 Length=477 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | ||||| ||||| || || || ||||| | ||||| || | | Sbjct 270 ATGCAAATCTTTGTAAAAACACTAACTGGAAAGACAATTACATTGGAAGTTGAGAGCTCG 211 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| |||||||| || || || || Sbjct 210 GACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCTGACCAG 151 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | ||||| || || || |||||||||||| || | | || | ||||| || Sbjct 150 CAGAGGCTTATCTTCGCTGGTAAGCAGCTGGAGGATGGCAGGACCTTGGCTGATTACAAT 91 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||||||||||||||| || || |||||| | || | | |||||| Sbjct 90 ATTCAAAAGGAATCGACCCTGCATTTGGTGCTTCGTCTAAGAGGAGGC 43 >seq14623 Length=969 Score = 123 bits (136), Expect = 2e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | ||||| || || ||||| || || ||| | ||||| || | | Sbjct 262 ATGCAGATCTTCGTCAAAACCCTGACTGGTAAGACGATAACGTTGGAAGTTGAGAGCTCG 321 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | |||||| |||||||| ||||| |||||||| || || || || Sbjct 322 GATACCATTGACAATGTAAAAGCCAAGATCCAGGACAAGGAAGGAATCCCGCCTGACCAG 381 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| |||| |||||||| || ||||| || || ||| | || |||| || || Sbjct 382 CAACGTCTGATATTTGCCGGAAAGCAGCTCGAAGACGGCCGAACCCTGGCAGACTACAAT 441 Query 24884 ATTCAAAAGGAATCGACACTACA 24906 |||||||||||||| || || || Sbjct 442 ATTCAAAAGGAATCAACCCTGCA 464 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| ||||||| || || || || || || || | ||||| || | | Sbjct 490 ATGCAGATTTTTGTTAAAACCCTCACTGGAAAGACGATCACCTTGGAAGTTGAGAGCTCG 549 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||| |||||||| || || || || || || Sbjct 550 GATACTATTGATAATGTCAAGGCCAAGATCCAGGACAAAGAGGGCATTCCCCCTGACCAG 609 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||||| ||||||||||| || ||||| |||||| |||| | | | ||||| ||| Sbjct 610 CAGCGTTTAATCTTTGCCGGAAAGCAGCTCGAGGATGGTAGAACCCTTGCCGATTACAAC 669 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || || || ||||| || | ||| |||| Sbjct 670 ATCCAGAAAGAATCCACCTTGCACCTGGT 698 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| ||||| ||||| || ||||| | ||||| || | | Sbjct 718 ATGCAGATCTTTGTCAAAACCCTAACAGGTAAGACCATTACTTTGGAAGTGGAGAGCTCG 777 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || ||||| ||||| || || || || || Sbjct 778 GACACCATCGACAATGTGAAGGCTAAGATACAGGACAAGGAAGGCATCCCCCCTGACCAG 837 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||||||||| || |||||||| || ||| ||| | | | || || || Sbjct 838 CAGCGCCTGATCTTTGCTGGAAAACAGCTCGAAGATGGCCGAACCCTTGCTGACTACAAT 897 Query 24884 ATTCAAAAGGAATCGAC 24900 ||||| || ||||| || Sbjct 898 ATTCAGAAAGAATCTAC 914 >seq32362 Length=298 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || ||| | || || || ||||| || || || || || | || Sbjct 6 ATGCAGATATTTGTGAAGACGTTGACAGGCAAGACTATCACACTGGAGGTTGAGAGCTCC 65 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | |||||| || || || ||||| ||||| || || || ||||| Sbjct 66 GATACGATTGATAACGTAAAAGCGAAAATTCAGGACAAGGAAGGGATTCCACCTGATCAG 125 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | || ||||| || ||||||||||||||| | ||| || | ||||||||| Sbjct 126 CAGAGGCTCATATTTGCTGGTAAACAGCTGGAGGATGGGCGAACTCTGGCCGATTATAAC 185 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || |||||||| ||||| ||| | || ||||| |||| || || Sbjct 186 ATCCAGAAGGAATCTACACTTCACCTTGTCTTGCGTCTGCGTGGTGG 232 >seq20474 Length=655 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || || || || ||||| || || || ||||| ||||| | || Sbjct 324 ATGCAGATTTTTGTGAAGACCCTCACTGGTAAGACAATCACTCTCGAGGTAGAGAGCTCC 265 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | || | || || |||||||||||||| || ||||| || || || || Sbjct 264 GATACAATTGACAATGTTAAGGCCAAGATCCAAGACAAGGAGGGAATCCCACCAGACCAG 205 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | |||||||| ||||| ||||| || ||| | | | || | || |||||| Sbjct 204 CAGAGGCTCATCTTTGCTGGGAAGCAGCTCGAAGATGGCCGCACCTTGGCCGACTATAAC 145 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| ||||| || || || ||| | || | || || | |||||| Sbjct 144 ATTCAGAAGGAGTCCACCCTCCACCTTGTCCTTCGTCTGAGGGGAGGC 97 >seq19645 Length=690 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| ||||| || || || || ||||| || || | || Sbjct 348 ATGCAGATCTTCGTGAAGACGCTGACCGGGAAGACCATAACCCTCGAGGTGGAGAGCTCC 407 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||||||| ||||| || || || ||||| || || Sbjct 408 GACACGATCGATAACGTCAAGGCAAAGATCCAGGACAAGGAGGGGATTCCTCCGGACCAG 467 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||||||||| ||||| |||||| | | | | || || ||| Sbjct 468 CAGAGGCTGATCTTTGCCGGGAAGCAGCTCGAGGATGGCCGCACGCTTGCGGACTACAAC 527 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 || || ||||| ||||| || ||| | ||| Sbjct 528 ATCCAGAAGGAGTCGACCCTTCACCTTGTG 557 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || || |||||||| || || | || Sbjct 120 ATGCAGATCTTCGTGAAGACCCTTACCGGGAAGACCATCACGCTCGAGGTGGAGAGCTCC 179 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| ||||| || || || || || Sbjct 180 GACACGATTGACAATGTCAAGGCGAAGATCCAGGACAAGGAAGGCATTCCCCCGGACCAG 239 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||| || |||||||| ||||| |||||| | | | | || |||||| Sbjct 240 CAGAGGCTGATATTCGCCGGGAAGCAGCTCGAGGATGGCCGCACACTCGCGGACTATAAC 299 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| ||||| || ||| | ||| | | || | |||||| Sbjct 300 ATCCAGAAGGAGTCGACCCTCCACCTCGTGCTCAGGCTGAGGGGAGGC 347 >seq31848 Length=311 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 ||||| |||||||| ||||| || ||||| ||||| || | | |||||||||||||| Sbjct 40 AAGATTCAAGACAAGGAAGGTATTCCTCCAGATCAGCAGAGACTCATCTTTGCCGGGAAG 99 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 |||||||||||| ||| | | ||||||||||| || |||||||| || || ||| Sbjct 100 CAGCTGGAGGATGGCCGAACACTCGCCGATTATAACATCCAGAAGGAATCAACCCTCCAC 159 Query 24908 TTGGTGTTGCGATTGCGCGGAGGC 24931 | || ||||| |||| || ||| Sbjct 160 CTTGTCTTGCGTCTGCGTGGTGGC 183 >seq451 Length=16219 Score = 102 bits (112), Expect = 7e-17 Identities = 254/378 (67%), Gaps = 11/378 (3%) Strand=Plus/Plus Query 139492 AGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGT 139551 ||||| ||||| ||||| || ||||||||||||| ||||| || | | ||||| ||| Sbjct 8912 AGGAACTCAAACACGTCTGCATGCCATGGTTCCAAGTAGATTGCAAAGGAACCTTTGCGT 8971 Query 139552 TT---GCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCC 139608 || |||||||| || || | || | | | || || ||||||||||| || Sbjct 8972 TTACCTCCACCTTGGTCCACATACCGAGCCGTGTCGTTAAACACGCGCAACATGGGGATG 9031 Query 139609 AGACCGCTCGCTGTTCCGTTGGTGCTACGGATGGGACTGTTGCGAGCTCGGACGTCATGT 139668 | |||| | | | ||||| || | ||||||| ||||| |||||||| | ||| Sbjct 9032 ATACCGTTGGAAGACCCGTTAGTACCACGGATGTAGCTGTTCGTAGCTCGGA--TATTGT 9089 Query 139669 ACAT--TGATGCCGATTCC-GCCGCCAAATTTGGATATTAAAACGCAATCGCGT-AATGT 139724 ||| |||| || || || ||||| | ||| || || || | | || || | ||||| Sbjct 9090 GCATGCTGATCCCAATACCTCCCGCCCACTTT-GAGATACAAGCAC-ATTGCTTCAATGT 9147 Query 139725 CTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTG 139784 || || || ||| || || || ||||| | | | ||| || || || | ||| Sbjct 9148 ATCATAGATTCCTTCAATTGAATCATCTTGCATGGCAAGTAAAAAACACGAAGATAATTG 9207 Query 139785 CGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTTCGA 139844 ||| || ||||| || ||||| || || |||| || || || | | || || Sbjct 9208 CGGCCGTGGAGTGCCAGCATTAAACAACGTGGGCGTCGCATGGGTAAAGAACTTTTGAGA 9267 Query 139845 CATCAATTCGTACGTTTC 139862 ||||||||||||||| || Sbjct 9268 CATCAATTCGTACGTCTC 9285 >seq28136 Length=407 Score = 98.7 bits (108), Expect = 9e-16 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || || || || || || || | ||||| ||| || Sbjct 11 GATGCAGATCTTCGTAAAGACCCTGACGGGCAAGACCATAACCTTAGAAGTTGAAAGCAG 70 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||| ||| | || | || || || ||||| ||||||||||| || || ||||| || Sbjct 71 CGATACAATCGACAATGTGAAGGCCAAAATCCAGGACAAAGAAGGGATCCCGCCCGACCA 130 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 |||||| |||| ||||| || || ||| |||| ||| | | || | ||||| || Sbjct 131 GCAACGTCTGATATTTGCGGGCAAGCAGTTGGAAGATGGACGCACTCTGGCGGATTACAA 190 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTG 24916 |||||| || || || || | ||| | ||| || Sbjct 191 CATTCAGAAAGAGTCAACCTTGCACCTTGTGCTG 224 >seq7414 Length=1926 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/226 (70%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || | || ||| | || || || || || || || || || || | | Sbjct 225 GATGCAGATTTTCGTGAAGACGTTGACGGGCAAGACGATCACTCTTGACGTCGAGTCGTC 166 Query 24763 CGACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821 ||| | | || |||| || || || ||| || ||||| ||||| || ||||| || | Sbjct 165 GGACTCGATCGACAACGTGAAGACGAA-GATTCAGGACAAGGAAGGCATTCCTCCTGACC 107 Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATA 24881 | || |||||||| || ||||| || |||||||||||| | | || || || | Sbjct 106 AGCAGCGTTTGATTTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACGTTGAGCGACTACA 47 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGG 24927 ||||||| ||||| ||||| || ||| | ||| | || ||||||| Sbjct 46 ACATTCAGAAGGAGTCGACGCTGCACCTTGTGCTTCGTCTGCGCGG 1 >seq1997 Length=5797 Score = 98.7 bits (108), Expect = 9e-16 Identities = 163/235 (69%), Gaps = 3/235 (1%) Strand=Plus/Plus Query 139409 TCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCG 139468 ||||||||| |||| | |||||| || || | ||||| ||||| | | ||||| Sbjct 547 TCATGAACAAGTCCGAAGTCCACATGGCAAAGAATAAATCACGCGCACGCATTTCTTCTT 606 Query 139469 AACCCATGTTACGTTTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGAT 139528 || ||| |||| || |||||||||||||| ||||||||||||| ||| | || Sbjct 607 TTCCATGGTTTTTCTTCAGGTCAAGGAAATCAAAAATATCAGCGTGCCATGTTTCGATAT 666 Query 139529 AGATGGCCATTGCGCCTTTCCGTTTGCCACCT---TGATCGACGTGTCGTACAGCATTAT 139585 |||| || | ||||| ||||| || ||| || || || | || | | || || Sbjct 667 AGATAGCAAAACTTCCTTTGCGTTTTCCTCCTCCCTGGTCTACATAACGAGCGGTATCAT 726 Query 139586 TGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGAT 139640 |||| || ||||||||||| | | ||| | | |||||||| || | ||||| Sbjct 727 TGAAAACACGCAACATCGGAACAATTCCGTTTGACGTTCCGTTTGTTCCGCGGAT 781 >seq27836 Length=415 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||| ||||| || ||||| || || || || || | |||||||||||||| || Sbjct 42 AAGATCCAGGACAAGGAGGGAATTCCACCTGACCAGCAGAGGTTGATCTTTGCCGGTAAG 101 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 |||||||| ||| | | || | ||||| || ||||| ||||||||||| || ||| Sbjct 102 CAGCTGGAAGATGGTCGTACTCTGGCCGATTACAATATTCAGAAGGAATCGACCCTTCAC 161 Query 24908 TTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| | || | || || ||| Sbjct 162 CTGGTGCTCCGTCTCCGTGGTGGC 185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449697738614920