Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq32362 95.1 1e-14 seq25614 91.5 1e-13 seq14623 91.5 1e-13 seq28136 86.0 5e-12 >seq32362 Length=298 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| |||||||| || || || || ||||| || || || | || ||| | Sbjct 6 ATGCAGATATTTGTGAAGACGTTGACAGGCAAGACTATCACACTGGAGGTTGAGAGCTCC 65 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | |||||| ||| ||| ||||| ||||| | || ||||| Sbjct 66 GATACGATTGATAACGTAAAAGCGAAAATTCAGGACAAGGAAGGGATTCCACCTGATCAG 125 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || || || | ||| ||||||||||||||||||| |||| |||| ||||| ||| Sbjct 126 CAGAGGCTCATATTTGCTGGTAAACAGCTGGAGGATGGGCGAACTCTGGCCGATTATAAC 185 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || || || |||||||| | ||| | || || | ||||| || || Sbjct 186 ATCCAGAAGGAATCTACACTTCACCTTGTCTTGCGTCTGCGTGGTGG 232 >seq25614 Length=477 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| ||||| |||| || || || ||||| | ||| ||| Sbjct 270 ATGCAAATCTTTGTAAAAACACTAACTGGAAAGACAATTACATTGGAAGTTGAGAGCTCG 211 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | | || || ||||| ||||| ||||| | ||| || || Sbjct 210 GACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCTGACCAG 151 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || ||||| | || ||||| ||||||||||||| ||| || |||| |||||||| Sbjct 150 CAGAGGCTTATCTTCGCTGGTAAGCAGCTGGAGGATGGCAGGACCTTGGCTGATTACAAT 91 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 |||||||| ||||| || |||| ||||| Sbjct 90 ATTCAAAAGGAATCGACCCTGCATTTGGTG 61 >seq14623 Length=969 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||||||||| |||| || || |||||||| | ||| |||| Sbjct 718 ATGCAGATCTTTGTCAAAACCCTAACAGGTAAGACCATTACTTTGGAAGTGGAGAGCTCG 777 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | | || || ||||| ||||| |||||| | ||| || || Sbjct 778 GACACCATCGACAATGTGAAGGCTAAGATACAGGACAAGGAAGGCATCCCCCCTGACCAG 837 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | ||| || |||||||| || |||| | |||| | || || ||||| Sbjct 838 CAGCGCCTGATCTTTGCTGGAAAACAGCTCGAAGATGGCCGAACCCTTGCTGACTACAAT 897 Query 110453 ATTCAAAAAGAATCTACGTTGCA 110475 ||||| ||||||||||| ||||| Sbjct 898 ATTCAGAAAGAATCTACCTTGCA 920 >seq28136 Length=407 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 || ||||| || || || || || | || ||||| ||||| ||| | ||| || Sbjct 9 AAGATGCAGATCTTCGTAAAGACCCTGACGGGCAAGACCATAACCTTAGAAGTTGAAAGC 68 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 |||||| ||| | | || || || || ||||||||||| | || || Sbjct 69 AGCGATACAATCGACAATGTGAAGGCCAAAATCCAGGACAAAGAAGGGATCCCGCCCGAC 128 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || ||| | || || | |||||| || ||| |||| |||| | || ||||||||||| Sbjct 129 CAGCAACGTCTGATATTTGCGGGCAAGCAGTTGGAAGATGGACGCACTCTGGCGGATTAC 188 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||||| ||||| || || |||||| | ||| | || || || ||||| Sbjct 189 AACATTCAGAAAGAGTCAACCTTGCACCTTGTGCTGAGGCTTCGTGGGGG 238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412662785272727