Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_022067.1 Length=109960 Score E Sequences producing significant alignments: (Bits) Value seq1495 145 5e-30 seq1674 107 1e-18 seq20114 104 2e-17 seq7611 104 2e-17 seq28760 87.8 1e-12 seq9754 86.0 4e-12 >seq1495 Length=7139 Score = 145 bits (160), Expect = 5e-30 Identities = 238/336 (71%), Gaps = 9/336 (3%) Strand=Plus/Plus Query 95517 CGTCGGATACGAAAGCGCCCTGTATCCGGATGG-CACCCCGCGCCCCCACGGGCAGGAAT 95575 ||||||| ||||| ||||| || | ||||||| || ||| || | || || | | Sbjct 6626 CGTCGGAGACGAAGGCGCCGTGGACGCGGATGGGCAGACCGGTGCCGCT-GGCCATGTAG 6684 Query 95576 AACCCGTCACCCATTCCCATGAGCTGCTCGGCTCCACCCTCGTCCAGGATCACCCGGCTA 95635 | | ||| ||||| |||| ||| |||||| || || ||| ||||| ||||| Sbjct 6685 AGCATGTCGCCCATGCCCAGCAGCGCCTCGGCGCCCATCTGGTCGAGGATGGTGCGGCTG 6744 Query 95636 TCGGTGAGTGATGCTGTGGCGAACGAGAGCCTAGACGGCACGTTGGATTTGATAAGGCCT 95695 ||| | || | | ||| | || || | ||| | ||||| ||||| ||||| Sbjct 6745 TCGATCTTGGAGCCGACCGAGAAGGCGATCCGCGTCGGGATGTTGGCCTTGATCAGGCCG 6804 Query 95696 GTGACTACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAATGCCGGCTGCGCGC 95755 |||| ||||||||| || |||||||||||||||| || || |||||||| || ||| Sbjct 6805 GTGATCACATCCACGCTCGGACGCTGCGTCGCCAGGATCAGGTGGATGCCGGCGGCCCGC 6864 Query 95756 GCCTTCTGGGCGATGCGGACAAT--GTTGGCCTCGACTTCTTTCTTGTAGCCGCCCATCA 95813 ||||||||||| | |||| | || ||| |||||| || |||||| | |||||| Sbjct 6865 GCCTTCTGGGCCAGGCGGGCGATCAGTT--CCTCGA--TC-TTCTTGCCCACCACCATCA 6919 Query 95814 TGAGGTCTGCCAGCTCGTCGACCACTACCACGATGT 95849 | || || ||||||||||||| || |||||||||| Sbjct 6920 TCAGATCGGCCAGCTCGTCGATGACGACCACGATGT 6955 >seq1674 Length=6551 Score = 107 bits (118), Expect = 1e-18 Identities = 120/158 (76%), Gaps = 3/158 (2%) Strand=Plus/Minus Query 95677 GTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAG 95736 ||||| ||||| ||||| |||| || |||||| ||| ||||| || ||||||| || Sbjct 3745 GTTGGCCTTGATCAGGCCGGTGATCACGTCCACGCTGGGGCGCTGGGTGGCCAGGATCAG 3686 Query 95737 ATGAATGCCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGACTTCTTT 95796 || |||||||| ||||| ||||||||||| | ||| | || |||||| || || Sbjct 3685 GTGGATGCCGGCCGCGCGGGCCTTCTGGGCCAGGCGCGCGATCAGCTCCTCGA--TC-TT 3629 Query 95797 CTTGTAGCCGCCCATCATGAGGTCTGCCAGCTCGTCGA 95834 |||| | | ||||||| ||||| ||||||||||||| Sbjct 3628 CTTGCCGACCACCATCATCAGGTCGGCCAGCTCGTCGA 3591 >seq20114 Length=670 Score = 104 bits (114), Expect = 2e-17 Identities = 143/199 (72%), Gaps = 6/199 (3%) Strand=Plus/Plus Query 95960 TCGGTGACCACCGGCTGCAAAAGGTGGGGGATACCGTTGTATGGGGTGAGTTCCACCATC 96019 ||||||||||||||| || ||||| ||||| || | ||| | ||||||||| |||| Sbjct 16 TCGGTGACCACCGGCGCCAGCAGGTGCGGGATCCCCTGGTAGACGCTGAGTTCCAGCATC 75 Query 96020 TTCGGGTCGATCATGATGAGCTTGACCCGATCA---GGATTGGCTCGGTAGAGCATGGAA 96076 |||||||||||||||| || || | | || || || ||| |||| | Sbjct 76 TTCGGGTCGATCATGA---GCATGCGCAGGTCTTTCGGCGACGCCTTGTACAGCAGGCTC 132 Query 96077 ACCAGCATCGAGTTGATGAAGCTGGACTTGCCCGATCCGGTGGCGCCAGCCACCAGCAGG 96136 | || ||||| ||||| | ||||||||||| ||||||| ||| || ||||||||| Sbjct 133 AGCACCATCGCGTTGACCGCGACCGACTTGCCCGAGCCGGTGGTGCCGGCGACCAGCAGG 192 Query 96137 TGGGGCATTTTGGCCAGGT 96155 || ||||| ||||||| Sbjct 193 TGCGGCATGCGCGCCAGGT 211 >seq7611 Length=1885 Score = 104 bits (114), Expect = 2e-17 Identities = 143/199 (72%), Gaps = 6/199 (3%) Strand=Plus/Minus Query 95960 TCGGTGACCACCGGCTGCAAAAGGTGGGGGATACCGTTGTATGGGGTGAGTTCCACCATC 96019 ||||||||||||||| || ||||| ||||| || | ||| | ||||||||| |||| Sbjct 259 TCGGTGACCACCGGCGCCAGCAGGTGCGGGATCCCCTGGTAGACGCTGAGTTCCAGCATC 200 Query 96020 TTCGGGTCGATCATGATGAGCTTGACCCGATCA---GGATTGGCTCGGTAGAGCATGGAA 96076 |||||||||||||||| || || | | || || || ||| |||| | Sbjct 199 TTCGGGTCGATCATGA---GCATGCGCAGGTCTTTCGGCGACGCCTTGTACAGCAGGCTC 143 Query 96077 ACCAGCATCGAGTTGATGAAGCTGGACTTGCCCGATCCGGTGGCGCCAGCCACCAGCAGG 96136 | || ||||| ||||| | ||||||||||| ||||||| ||| || ||||||||| Sbjct 142 AGCACCATCGCGTTGACCGCGACCGACTTGCCCGAGCCGGTGGTGCCGGCGACCAGCAGG 83 Query 96137 TGGGGCATTTTGGCCAGGT 96155 || ||||| ||||||| Sbjct 82 TGCGGCATGCGCGCCAGGT 64 Score = 96.9 bits (106), Expect = 2e-15 Identities = 126/172 (73%), Gaps = 7/172 (4%) Strand=Plus/Minus Query 95684 TTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAATG 95743 ||||| ||||| |||| || ||||| || || |||||||| ||||||| || || ||| Sbjct 631 TTGATCAGGCCGGTGATGACGTCCACCGACGGGCGCTGCGTGGCCAGGATCAGGTGGATG 572 Query 95744 CCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAAT--GTTGGCCTCGACTTCTTTCTTGT 95801 ||||| |||||||||||||| || | |||| | || ||| |||||| | |||||| Sbjct 571 CCGGCGGCGCGCGCCTTCTGCGCCAGGCGGGCGATCAGTT--CCTCGA---CCTTCTTGC 517 Query 95802 AGCCGCCCATCATGAGGTCTGCCAGCTCGTCGACCACTACCACGATGTAGGG 95853 | || |||||| | ||| || | ||||| | | | |||||| |||| Sbjct 516 CGACGATCATCATCATGTCGGCGAATTCGTCTATGAAGATGACGATGAAGGG 465 >seq28760 Length=390 Score = 87.8 bits (96), Expect = 1e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 95957 GGCTCGGTGACCACCGGCTGCAAAAGGTGGGGGATACCGTTGTATGGGGTGAGTTCCACC 96016 || ||||||||||| | || || || |||||| | ||||| | ||||||||| | Sbjct 176 GGGTCGGTGACCACGTCCGCCAGCAGATGCGGGATATCCTTGTACATGCTGAGTTCCAGC 235 Query 96017 ATCTTCGGGTCGATCATGATGAGCTTGACCCGATCAGGATTGGCTCGGTAGAGCATGGAA 96076 ||||| || ||||||||||| | | | |||| || || |||||||||| || Sbjct 236 ATCTTGGGATCGATCATGATCATGCGGCACTGATCCGGGGTGAGCCGGTAGAGCAGCGAC 295 Query 96077 ACCAGCATCGAGTTGATGAAGCTGGACTTGCCCGATCCGGTGGCGCCAGCCACCAGCAGG 96136 | | ||| |||||| | ||||||||||| ||||||| || || || ||||| Sbjct 296 AGGATCATGCAGTTGAGCCCGACCGACTTGCCCGAACCGGTGGTCCCGGCGACGAGCAGA 355 Query 96137 TGGGGCAT 96144 || ||||| Sbjct 356 TGCGGCAT 363 >seq9754 Length=1476 Score = 86.0 bits (94), Expect = 4e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 95671 CGGCACGTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAG 95730 ||| | ||||| ||||| ||||| |||| || ||||| || || |||||||| ||||| Sbjct 1153 CGGGATGTTGGCCTTGATCAGGCCGGTGATCACGTCCACCGACGGGCGCTGCGTGGCCAG 1212 Query 95731 GACGAGATGAATGCCGGCTGCGCGCGCCTTCTGGGCGATGCG 95772 || || || |||||||| || ||||||||||| || | ||| Sbjct 1213 GATCAGGTGGATGCCGGCCGCACGCGCCTTCTGTGCCAGGCG 1254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 351594847185659