Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq19645 132 3e-26 seq28136 125 5e-24 seq20474 122 6e-23 seq2166 111 1e-19 seq14623 100 2e-16 seq34320 96.9 2e-15 seq7414 95.1 8e-15 seq31347 93.3 3e-14 seq34564 86.0 4e-12 seq25614 84.2 1e-11 >seq19645 Length=690 Score = 132 bits (146), Expect = 3e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||||| ||| ||||||||| ||||| ||||||| || |||| |||| Sbjct 559 AGCACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGGCCATCC 500 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| ||||| |||||||| | |||||||| | || | |||||||||||| Sbjct 499 TCGAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCCGGAGGAATCCCCTCCTTGTCC 440 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || ||| |||||| | |||| || | ||| || || | |||||||||| Sbjct 439 TGGATCTTTGCCTTGACGTTATCGATCGTGTCGGAGCTCTCCACCTCGAGGGTTATGGTC 380 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || || || ||||| || |||||||||||| Sbjct 379 TTCCCGGTCAGCGTCTTCACGAAGATCTGCATG 347 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 |||||||||| ||| || || ||||| | ||| ||||||||| ||||||||||||| Sbjct 346 CCTCCCCTCAGCCTGAGCACGAGGTGGAGGGTCGACTCCTTCTGGATGTTATAGTCCGCG 287 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || |||| |||| || || ||||| |||||||| ||||| | |||||||| | || Sbjct 286 AGTGTGCGGCCATCCTCGAGCTGCTTCCCGGCGAATATCAGCCTCTGCTGGTCCGGGGGA 227 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || |||||||| | || || ||||| | |||| || | ||| || Sbjct 226 ATGCCTTCCTTGTCCTGGATCTTCGCCTTGACATTGTCAATCGTGTCGGAGCTCTCCACC 167 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | || |||||||| || || |||||||| || ||||||||||| Sbjct 166 TCGAGCGTGATGGTCTTCCCGGTAAGGGTCTTCACGAAGATCTGCAT 120 >seq28136 Length=407 Score = 125 bits (138), Expect = 5e-24 Identities = 161/220 (73%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 34762 CCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTC 34821 |||||| || ||||| | ||| ||| ||||||||||| || |||| || |||| | Sbjct 227 CCTCAGCACAAGGTGCAAGGTTGACTCTTTCTGAATGTTGTAATCCGCCAGAGTGCGTCC 168 Query 34822 ATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34881 ||| |||| ||||| || || || ||||| ||||||||||| |||| | ||| || || Sbjct 167 ATCTTCCAACTGCTTGCCCGCAAATATCAGACGTTGCTGGTCGGGCGGGATCCCTTCTTT 108 Query 34882 GTCGTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGG 34937 ||| | ||||| || || || | ||||| || || || || || | || Sbjct 107 GTCCTGGATTTTGGCCTTCAC--AT--TGTCGATTGTATCGCTGCTTTCAACTTCTAAGG 52 Query 34938 TTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||||||| ||||| ||||||||||| ||||||||||| Sbjct 51 TTATGGTCTTGCCCGTCAGGGTCTTTACGAAGATCTGCAT 12 >seq20474 Length=655 Score = 122 bits (134), Expect = 6e-23 Identities = 167/231 (72%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || |||||||||| ||||||||||| | ||| ||||||||| || || ||||| | Sbjct 326 CCACCCCTCAACCGGAGGACCAGGTGGAGCGTGGACTCCTTCTGGATATTGTAGTCAGCC 385 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 | | |||| |||| || || ||||| || |||||||| || | |||||||| | || Sbjct 386 AAGGTGCGGCCATCTTCAAGCTGCTTACCAGCGAAGATGAGCCTCTGCTGGTCCGGGGGG 445 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTC 34926 | ||||||||||| | || || || || || ||||||| || | ||| Sbjct 446 ATTCCCTCCTTGTCCTGGATCTTGGACTTTAC--AT--TATCGATTGTGTCGGAGCTCTC 501 Query 34927 GACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| |||| ||| |||||||| || || |||||||| || ||||| ||||| Sbjct 502 GACCTCAAGGGTGATGGTCTTGCCGGTAAGGGTCTTAACGAAGATTTGCAT 552 Score = 118 bits (130), Expect = 7e-22 Identities = 167/231 (72%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 |||||||||| | ||||| ||||| | |||| ||||||||||||||||||||| | Sbjct 98 CCTCCCCTCAGACGAAGGACAAGGTGGAGGGTGGACTCCTTCTGAATGTTATAGTCGGCC 157 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 | | |||| |||| || || ||||| || || ||||| || | ||||||||| | || Sbjct 158 AAGGTGCGGCCATCTTCGAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCTGGTGGG 217 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATT-CATTGG---CCTC 34926 | ||||||||||| | || || || || || | || ||| || || ||| Sbjct 218 ATTCCCTCCTTGTCTTGGATCTTGGCCTTAAC--AT--TGTCAATTGTATCGGAGCTCTC 273 Query 34927 GACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || | || || ||||| || ||||||||||| ||||| |||||||| Sbjct 274 TACCTCGAGAGTGATTGTCTTACCAGTGAGGGTCTTCACAAAAATCTGCAT 324 >seq2166 Length=5462 Score = 111 bits (122), Expect = 1e-19 Identities = 143/195 (73%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 34790 TTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATC 34849 ||||| ||||| |||||||| || | || |||| || || ||||| ||||| || ||| Sbjct 776 TTCTGGATGTTGTAGTCCGAAAGCGTTCGGCCATCCTCGAGCTGCTTGCCGGCAAAAATC 835 Query 34850 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT 34909 || || |||||||| |||| | || ||||| || | ||||| || ||||| || | Sbjct 836 AGGCGCTGCTGGTCAGGCGGAATACCTTCCTTTTCCTGGATTTTCTGCTTGAC--AT--T 891 Query 34910 ATCGATTCATTGGC----CTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 || || || | | ||| || || | || |||||||| || || |||||||| || Sbjct 892 GTCAATGCAGTCGGACGGCTCCACGTCCAACGTGATGGTCTTGCCGGTCAGGGTCTTCAC 951 Query 34966 AAAGATCTGCATGAT 34980 ||||||||||||||| Sbjct 952 AAAGATCTGCATGAT 966 >seq14623 Length=969 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || |||||||| | ||||| || || | ||| ||||| ||||| || ||||| | Sbjct 488 CCACCCCTCAAACGGAGGACGAGATGCAGGGTTGATTCCTTTTGAATATTGTAGTCTGCC 429 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| | || | || || || ||||||||||| || ||||| ||||||||||| |||| Sbjct 428 AGGGTTCGGCCGTCTTCGAGCTGCTTTCCGGCAAATATCAGACGTTGCTGGTCAGGCGGG 369 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || |||||||| | || || ||| || | || | || | ||| || Sbjct 368 ATTCCTTCCTTGTCCTGGATCTTGGCTTTTACATTGTCAATGGTATCCGAGCTCTCAACT 309 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || | ||||| ||||| || || ||||| || || |||||||||||| Sbjct 308 TCCAACGTTATCGTCTTACCAGTCAGGGTTTTGACGAAGATCTGCATG 261 Score = 100 bits (110), Expect = 2e-16 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||||| | ||||||||||| | |||| || ||||| ||||| || || | Sbjct 716 CCACCCCTCAGACGGAGGACCAGGTGCAAGGTGGATTCTTTCTGGATGTTGTAATCGGCA 657 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| | | |||| || || ||||||||||| ||||| | || |||||||| | || Sbjct 656 AGGGTTCTACCATCCTCGAGCTGCTTTCCGGCAAAGATTAAACGCTGCTGGTCAGGGGGA 597 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTC 34926 | ||||| ||||| | || || ||||| || |||| || || | ||| Sbjct 596 ATGCCCTCTTTGTCCTGGATCTTGGCCTTGAC--AT--TATCAATAGTATCCGAGCTCTC 541 Query 34927 GACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || | ||| || |||||||| |||||||| || ||||| |||||||| Sbjct 540 AACTTCCAAGGTGATCGTCTTTCCAGTGAGGGTTTTAACAAAAATCTGCAT 490 >seq34320 Length=242 Score = 96.9 bits (106), Expect = 2e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 34790 TTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATC 34849 ||||| ||||| ||||| | | | | || |||| || || ||||| || ||||||||| Sbjct 1 TTCTGGATGTTGTAGTCGGCCAAGGTACGGCCATCCTCGAGCTGCTTGCCAGCGAAGATC 60 Query 34850 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT 34909 || | |||||||| |||| | || |||||||| | || || |||||| | Sbjct 61 AGCCTCTGCTGGTCCGGCGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCG 120 Query 34910 ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAG 34969 || | || | |||||| || | || |||||||| || ||||||||||| || ||| Sbjct 121 ATGGTGTCGGAGCTCTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAG 180 Query 34970 ATCTGCAT 34977 |||||||| Sbjct 181 ATCTGCAT 188 >seq7414 Length=1926 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||||||||| ||||| | |||| |||| ||||| ||||| |||||||| Sbjct 33 CTCCTTCTGAATGTTGTAGTCGCTCAACGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAA 92 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 |||| || |||||||| | || | || |||||||| | || || || ||| Sbjct 93 AATCAAACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGAATCTTCGTCTTCACGTT 152 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | ||||| || | |||||| |||| || || ||||| ||||| | ||||| || Sbjct 153 GTCGATCGAGTCCGACGACTCGACGTCAAGAGTGATCGTCTTGCCCGTCAACGTCTTCAC 212 Query 34966 AAAGATCTGCAT 34977 || |||||||| Sbjct 213 GAAAATCTGCAT 224 >seq31347 Length=324 Score = 93.3 bits (102), Expect = 3e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | ||| |||||||||||||| || |||| ||| ||||| | || Sbjct 201 AGGACAAGGTGGAGGGTCGATTCCTTCTGAATGTTGTAATCCGCAAGGGTGCGCCCGTCC 260 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| || |||||||| || | |||||||| |||| | |||||||||||| Sbjct 261 TCGAGCTGCTTCCCAGCGAAGATAAGCCTCTGCTGGTCCGGCGGGATCCCCTCCTTGTC 319 >seq34564 Length=234 Score = 86.0 bits (94), Expect = 4e-12 Identities = 131/186 (70%), Gaps = 8/186 (4%) Strand=Plus/Minus Query 34797 TGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTT 34856 |||| ||||||| ||| | | | | || || || ||||| || || ||||| || | | Sbjct 234 TGTTGTAGTCCGCAAGGGTCCTCCCGTCCTCGAGCTGCTTACCCGCAAAGATAAGCCTCT 175 Query 34857 GCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGAT- 34915 ||||||| | || | ||||||||||| | || || || ||| ||||||| Sbjct 174 GCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGT----TATCGATG 119 Query 34916 ---TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATC 34972 || | ||| || || | ||| |||||||| || ||||||||||| ||||||||| Sbjct 118 GTGTCCGAGCTCTCCACCTCGAGGGTGATGGTCTTCCCGGTGAGGGTCTTGACAAAGATC 59 Query 34973 TGCATG 34978 |||||| Sbjct 58 TGCATG 53 >seq25614 Length=477 Score = 84.2 bits (92), Expect = 1e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || |||||||| | || || ||||| | ||| || ||||| ||||| || || | Sbjct 272 CCACCCCTCAAACGGAGAACAAGGTGGAGGGTAGATTCTTTCTGGATGTTGTAATCGGCA 331 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| | || | || || || |||||||| ||||||||||| || |||||||| | || Sbjct 332 AGGGTTCGGCCGTCCTCAAGCTGCTTTCCTGCGAAGATCAGACGCTGCTGGTCGGGGGGG 391 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | ||| |||||||| | || || ||| || | || | ||| | |||||| Sbjct 392 ATCCCTTCCTTGTCCTGGATCTTAGCTTTAACATTGTCAATGGTGTCAGAGCTCTCGACT 451 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAG 34956 || | || |||||||| || ||||| Sbjct 452 TCGAGAGTGATGGTCTTACCGGTGAG 477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325551732168641