Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_022749.1 Length=39758 Score E Sequences producing significant alignments: (Bits) Value seq4702 212 2e-50 >seq4702 Length=2870 Score = 212 bits (234), Expect = 2e-50 Identities = 380/547 (69%), Gaps = 10/547 (2%) Strand=Plus/Minus Query 18571 TGAATCGCCACAGATAATCTAGACACTTCCGAGCCGCTGATAATATTGGTTTTCGTATTC 18630 ||||||||| | | | |||||||||||| |||||| || ||| | | | |||| | || Sbjct 1768 TGAATCGCCCCGGCTTATCTAGACACTTTTGAGCCGTTGGGAATGTCGCTGTTCGAACTC 1709 Query 18631 AGTTGGTGGCATA-TGATCACTC-GAACCATGCCGACGCTTACTGTTATAAAACATTTCG 18688 || | ||| | | | | || ||| || |||| ||| || ||||||||| Sbjct 1708 TACAGGGG--ATAGTCCTGCCGCCGATGAATGACGGCGCTGTGAGTTGTAGAACATTTCG 1651 Query 18689 ATGTAATCAAAAATATCACCGCGAGCTTCTTCTCGCGTTCCGTAGATCTTTTTCTTTATC 18748 ||||| | || | || | | || || || || ||| | |||| | | || Sbjct 1650 ATGTAGTTGAAGACGTCCGCTCTCGCGTCATCACGGGTTGCATAGACCCGCCTGCGGATG 1591 Query 18749 CGTTCACGTTTCAGTAGCTGGAAAAAACTTTCTGCGACTGCGTTGTCATGACAGTTACCG 18808 ||||| || || || || ||||| || || || || || |||||||| || ||||| || Sbjct 1590 CGTTCGCGCTTGAGCAGTTGGAAGAAGCTCTCGGCCACAGCGTTGTCGTGGCAGTTGCCA 1531 Query 18809 CGACGGCTCATACTGCCCTCCAGCCCGTGTGATTTCAGGAACGACTGCCACTCATAGCTT 18868 || |||||||| |||| |||| ||| |||||| | ||||||||| | || Sbjct 1530 CGCCGGCTCATGCTGCTGACCAGGTTGTGCTCGCGCAGGAAGGTCTGCCACTCGTGGCCG 1471 Query 18869 GTGTACTGACTGCCTTGATCAGAATGAACCAGCACCTGCTTTTGAGGATTACGTCGCCAC 18928 ||| |||||| ||||||||| |||||||||| || | | || | || ||||| Sbjct 1470 GTGAACTGACAGCCTTGATCGGAATGAACCATGACAGGTGCACGCGGCTGGCGGCGCCAT 1411 Query 18929 ACGGCCATCAGAAGTGCATTCAGGACAATATCCTTTGTCA-TCCGGGGCTGC--ATTGAC 18985 | |||||||| ||||||| ||||| | | | |||| | ||| |||| || ||| Sbjct 1410 AGCGCCATCAGCAGTGCATCGAGGACCAGGCTCGT-GTCAATTCGG--CTGCCCATGGAC 1354 Query 18986 CAGCCAATAACTTTGCGCGAGAACAGGTCAACAACCACAGCCAGATACAGCCAGCCTTCG 19045 ||||| | || | ||| |||||||| || || || || ||||| ||||||||||||||| Sbjct 1353 CAGCCCACTACCTGGCGTGAGAACAGATCGACCACAACCGCCAGGTACAGCCAGCCTTCG 1294 Query 19046 TGAGTCCGGATGTAGGTGATGTCCGTTACCCAACGCTCATCCGGTGCTTCCGAGTTGAAC 19105 || || ||||||||||||||||| || |||||| || || || | ||| |||||| Sbjct 1293 TGGGTTCGGATGTAGGTGATGTCAGTGACCCAAGACTGATTGGGCTCATCCACCTTGAAC 1234 Query 19106 TGCCGCT 19112 || |||| Sbjct 1233 TGACGCT 1227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127050358854960