Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_022750.1 Length=33628 Score E Sequences producing significant alignments: (Bits) Value seq8149 224 2e-54 seq1131 214 4e-51 seq8333 187 5e-43 seq1720 86.0 1e-12 seq20278 80.6 6e-11 >seq8149 Length=1767 Score = 224 bits (248), Expect = 2e-54 Identities = 444/650 (68%), Gaps = 24/650 (4%) Strand=Plus/Minus Query 16490 CCGAGGTGAAAGCCTACCGCCAGAATTTCAGCCAGCGTGAGCTGATGGTCATCTGGCCGG 16549 |||||| | ||||||||| || | ||| ||||||| ||||||||| | | ||||| | Sbjct 1744 CCGAGGCCCAGGCCTACCGCGAGCACTTCGGCCAGCGCGAGCTGATGCTGCTGTGGCCCG 1685 Query 16550 ATTTCCTCGCATGGGATACGGTCAGCAGCACCACCGCCACCGCGTATGCCACCGC--CCG 16607 ||| || ||| | ||| |||||| ||| | | | | || | ||| Sbjct 1684 GCTTCAAGGCGCTGGAC-CTGTCT--------ACCGCCGCCGTGCAGGACGCCTCACCCG 1634 Query 16608 TG-------CGCTGGGTCTGCGTGCCAAAATCGACCAGGAGCAGGGCTGGCATAAAACGC 16660 || | ||||| ||||| || ||||||||||||||||||||||| || |||| Sbjct 1633 TGGCCTACGCCCTGGGCCTGCGCGCGCGCATCGACCAGGAGCAGGGCTGGCACAAGACGC 1574 Query 16661 TGTCCAACGTCGGGGTGAACGGTGTTACCGGCATCA-GCGCC-TCTGTATTCTGGGATTT 16718 |||||||||| | || || ||| |||||| |||| | || ||| |||| | Sbjct 1573 TGTCCAACGTGCCGTTGTCGGGCGTTCTGGGCATCTCGCGCGATGTGCATT--GGGACCT 1516 Query 16719 GCAGGAGTCCGGCACCGATGCTGACCTGTTGAACGAGTCAGGTGTCACAACGCTGATTCG 16778 ||| ||| ||||| || | | | | ||| || | || |||| |||||||| | Sbjct 1515 GCAAAGCCCCGATACCGAGGCCGGCATCCTCAACCAGGCCGGCATCACCACGCTGATCCA 1456 Query 16779 CCGTGACGGTTTCCGCTTCTGGGGTAACCGTACCTGCTCTGATGACCCGCTGTTCCTCTT 16838 | | || |||||||||||| || |||||| | || | |||||||| ||| Sbjct 1455 GAGCCAGGGCCACCGCTTCTGGGGCTCGCGCACCTGCACGGACAGCGAGCTGTTCCGCTT 1396 Query 16839 TGAAAACTACACCCGCACCGCGCAGGTGCTGGCCGACACGATGGCTGAGGCGCACATGTG 16898 || | | |||||||||||||||||||||||||| ||||| |||||||| | || Sbjct 1395 CGAGTCCAGCGTGCGCACCGCGCAGGTGCTGGCCGACACCATGGCCGAGGCGCATTTCTG 1336 Query 16899 GGCGGTGGACAAGCCCAT-CACTGCAACGCTGATTCGCGACATCGTTGACGGCATCAATG 16957 ||| |||||||||||||| ||| || | ||| | |||||| | || |||||||| Sbjct 1335 GGCCGTGGACAAGCCCATGCACCCCAGC-CTGGTCAAGGACATCCTGGAAGGCATCAACA 1277 Query 16958 CCAAATTCCGTGAGCTGAAAACAAACGGCTATATCGTGGATGCGACCTGCTGGTTCAGCG 17017 |||| ||||| || ||||| | ||||| ||| |||| | | ||||| | || Sbjct 1276 CCAAGTTCCGCGAACTGAAGGCCCTGGGCTACATCCTGGACGGCAAGGCCTGGTACGACG 1217 Query 17018 AAGAATCCAACGATGCGGAAACCCTCAAGGCCGGAAAACTGTATATCGACTACGACTATA 17077 || |||||| | | || ||||||||||| || ||| | ||||||||||| | Sbjct 1216 AAACGGTCAACGAGACCGCCACGCTCAAGGCCGGCAAGCTGGTGCTGGACTACGACTACA 1157 Query 17078 CACCGGTGCCTCCTCTCGAAAACCTGACCCTGCGCCAGCGTATTACCGAT 17127 | || |||||||| || || ||||| | |||||||| || |||||| Sbjct 1156 CGCCCGTGCCTCCGCTGGAGGACCTGGGTTTTCGCCAGCGCATCACCGAT 1107 >seq1131 Length=8710 Score = 214 bits (236), Expect = 4e-51 Identities = 964/1499 (64%), Gaps = 43/1499 (3%) Strand=Plus/Plus Query 1292 GGCGTGCATGGTCGCCCAGGCGAGGTCGGCGTGGCTGGCTTCCTCGCTGCGGCTGGCCTC 1351 ||| |||||| ||||||||| || || ||||||| ||| || |||||||||| || Sbjct 3894 GGCATGCATGCACGCCCAGGCCAGATCCGCGTGGCCGGCCTCATCGCTGCGGCCCGCGGT 3953 Query 1352 ATAGGTGGCGCTGCGTCCGCTGC--TG--GTCATGGTCTTGCGGATAGCCATAAACGA-G 1406 |||||| |||| ||||| || |||| ||||||||| |||||||||| | Sbjct 3954 GTAGGTGAT-CTGC---CGCTGGGATGCCGTCAGCACCTTGCGGATGGCCATAAACGCCG 4009 Query 1407 CTGGTGATGTCGGTGG---CGCTGACGTCATATTCCAGACAGCCACGGCGGATAACGTCT 1463 ||| | || ||| ||||| | ||| | || | ||| || ||| || | Sbjct 4010 CTGCC-ACATCCGTGCACCCGCTGTC--CATCTCAAAG-CGGCCCTTGCCGATCACCTGC 4065 Query 1464 TTTGCCTTGAGCACCATTGCGGTT-TTCATTTCCGGCGTGTAGCGGATATCGCGCGCGGC 1522 || ||||| ||||||| |||| | |||| ||| |||| || | ||||| Sbjct 4066 TTGGCCTTCAGCACCAG-GCGGCTCTTCACCTCCACGCTGTACTGGTAGGCCCGCGCCTG 4124 Query 1523 GGGATAGAACGAGCGCACGAGCTGGAACACACCGACACCGAGGCCGGTGGCATCAATCCC 1582 ||| ||||| | ||| ||| | || || || || ||| ||| || || || Sbjct 4125 CGGAAAGAACTTGATGACGTTCTGATAGACGCCCTGCCCCAGCCCGCTGGTGTCGATGCC 4184 Query 1583 GATGTATTCGACGTTGTATTTTTCGGTGAGTTTGCGGATGGATTCTGCCTGGGTGGCAAA 1642 |||||| |||||| | || | |||| |||||||| |||||||| | || Sbjct 4185 GATGTAGGTCACGTTGAACTTCTGCGTGATCGCGCGGATGGCCTCTGCCTGCTGCTCGAA 4244 Query 1643 GTCCATGCCTTTCCACTGGTGACGTTCAAGGATCCTGAATTTGCCACCGGCCACCACCGG 1702 |||| || || |||| || || | || | || ||| ||||| || | | || ||| Sbjct 4245 GTCCGCCCCCTTGAACTGCTGCCGGTGCAGCAGCCGGAACTTGCCGCCCGGCGCCCGCGG 4304 Query 1703 CGGTGCCAGCACCACGCATCCGGCGCTG--TCGCCACGGTGTGACGGGTCGTAACCAATC 1760 |||||| | |||||| || | | ||| | ||||| ||| || |||||||| || | | Sbjct 4305 CGGTGCAATCACCAC-CAGC-GCCGCAGCATCGCCGGTGTGCGATGGGTCGTACCCCACC 4362 Query 1761 CATACCGGGCGGGAGCCGAACGGATTTGCGGCAAACGGCGCATAGTCTTCCCATTCTTCC 1820 || ||||| | || |||| | |||||||||| | || |||| | ||| Sbjct 4363 CACACCGGAAAGTGCGCGTACGGCCGCGTGGCAAACGGCTTGCAATCCGCCCACGCCTCC 4422 Query 1821 -AGCGTGTCGACCATACAGCGTTGCAGCTCCTCGAACGGGAACACCGACGCCTTGTCGTC 1879 ||| |||| ||||| |||| |||| |||| || || ||||| || ||||||| Sbjct 4423 CAGC-TGTCCACCATGCAGCCCTGCATTTCCTTGAGCGTGAACAGGCTAGCGCTGTCGTC 4481 Query 1880 AACAAATTCACACATGAACAGGTTTTTAAAATCGTCGGCGCTGTTTTCGCGTTTGAGCTG 1939 | || || |||||| ||||||| || || || | |||| |||| |||| Sbjct 4482 GATGAACTCGCACATGTACAGGTTGGCGAACTCTTCCGGGCTGCTTTCTTCCCGCAGCTC 4541 Query 1940 CTCAATGTCGAACAGCGTGCAGCC--GCCTTTCAGGGCGTCCTCAATGGTGACAATCTGC 1997 || ||||||||||| ||||||| | | | | | ||||||| || || || | | Sbjct 4542 GTCGATGTCGAACAGGTTGCAGCCCAGGCGTGCCG--CGTCCTCGATCGTCACCACGTCG 4599 Query 1998 CGCCACTGGCCGTCCGCACAGAGAAGCCCACCGGCAAGGGCGTTATGACTGACGTCGATT 2057 ||||||| || || || | | | | || ||| || || || || |||||||| Sbjct 4600 CGCCACTTGCGATCGGCCCCGCGGATGCCGCCGCGCAGCGCTGCGTGGCTCACGTCGATG 4659 Query 2058 TCCACGCGTTCGGCGGCGCTGGCGCGTCCCCGGTTGAACAGTTCACCCGACCAGAACGGG 2117 | | ||| | |||| || || |||| | || ||||||||| Sbjct 4660 GTGATGGCCTCGCCCTTGCTG---CGGCCTTTGTTGCGCTCCGTGCCGTTCCAGAACGGA 4716 Query 2118 TAGGCGTCGTGCGCCAGCGTGGACGGGGTGGAGAAATAGGTCGATCGCAGGTGACTCTGT 2177 || || || |||| || | |||||||||||||| || ||| ||| || | || Sbjct 4717 TACGCCTCATGCGACATGGCCGACGGGGTGGAGAAGTACGTCTTGCGCCAATGCTTGTGC 4776 Query 2178 GAGGCCATACCTGATGCCACCTTACGCAGTACCTGAAAATTCGGGATCCAGAAAATCTCA 2237 | ||||| | | |||||||| || |||| || | ||| || | |||| Sbjct 4777 GTCGCCATGGCCGCGGCCACCTTGTTGAGCTGGCGAAAGCCCGACACCCAAAAGAACTCA 4836 Query 2238 TCGACGTACAGGTCGCCGTTATGGCTCTGTGCGGTGTTGGAGTTGGTGCCGAGAAAAATC 2297 |||| ||| | ||||||| | | | ||| || || || | |||||||| | ||| | Sbjct 4837 TCGAAGTAGAAGTCGCCGCTGCGCCCCTGCGCCGTCTTCGCATTGGTGCCCAAAAAGTGC 4896 Query 2298 AGTTTTGCACCGTTATTGCCCAGGACAATCGGGTCACCGGTCAGGTCAACGTCAACCAGC 2357 || | |||||||| ||| || || ||||| ||| |||| || ||| | |||||| Sbjct 4897 AGCTCCGCACCGTTCGA---CAGCACGATAGGGTCGCCGCTCAGCTCCACGCCCACCAGC 4953 Query 2358 CGGGCAAAGGCGATGATGTATTCGCGGAACACATACGCCTGCGTTTTACTGGCCGACAGA 2417 | ||||||||| | ||||| |||| | |||||||| || || || || Sbjct 4954 CCGGCAAAGGCCAGCATGTACGTCTTGAACTGGTGCGCCTGCGCCTTTGATGCAGAAAGG 5013 Query 2418 AAAATCTGGTTATGACCGGTTTTCAGGGCGCGCAGCAGCGCCTCGCGGGAAAAATAAAAC 2477 |||||||| || | || | | |||||| | |||||||||||||| ||| || | Sbjct 5014 AAAATCTGATTGCGCCCCTCCGTGATGGCGCGTATCAGCGCCTCGCGGGCAAAGTACCAA 5073 Query 2478 GTCGCGCCAATCTGGCGGGATTTCAGAATATCGCGGATGCGGTGCTCAAGCCCGGCGCGA 2537 || || || ||||| || || ||||| | || |||| | | || | | | Sbjct 5074 GTGGCCCCGATCTGCCGCGACTTCAGCAGCAGCCGCGTGCGCTCCGTCTGCGCCTCCC-- 5131 Query 2538 TACCAGTGCAACTGATATTCGAAAGACTGCTCAAAGAAAATCTGCTCCAGCTTTTCGATG 2597 |||| | | ||| | || |||||| ||| |||| | |||||| ||||| Sbjct 5132 -ACCACTTCGCGGCATACCCAAAGTTCTGCTCGTGGAAGATCTCCAGCAGCTTCTCGATC 5190 Query 2598 GCCTCGTCACTGAAAAAATTCTTTTTCGGTTTGCG-ACGCCCGCCTTTGTTGCGGTTAGC 2656 ||| || |||| || ||||| |||| | |||| |||||| || Sbjct 5191 TGCTCTTCGGTGAAGTGGTTGCGCTTCGGCGTGCGCTTGGGCGCC-GCGTTGCGCGCGGC 5249 Query 2657 GACGTTCGGATTAAGGTCTGCCTCGTTGCCGGT-CTGACT-GTAGCGGTTTACCCGTGCC 2714 | ||| || || | ||| | || ||||| || || || |||||| | || || ||| Sbjct 5250 AATGTTGGGGTTCAAGTCGCCTTCCTTGCCCGTGCT--CTGGTAGCGCTCCACGCGCGCC 5307 Query 2715 AGTCGTTCAATCTGGCGTCCGAGCAGGTCAATTTCCTTGAAGTCACCGCCGGTTTTCTG 2773 || || | ||| || || |||||||| || ||||||||||| ||||| || ||||| Sbjct 5308 GTGCGCTCCAGCTGCCGGCCCAGCAGGTCGATCTCCTTGAAGTCGCCGCCCGTCTTCTG 5366 Score = 91.5 bits (100), Expect = 3e-14 Identities = 109/147 (74%), Gaps = 1/147 (1%) Strand=Plus/Plus Query 3451 ATCGCGATGAACAAGGCCGCGCAGAAGGTCTATACCTCAATGGAAATTCAGCCGAACTTT 3510 |||| | |||||||||||| |||||| |||| ||||| || || || | || | || Sbjct 6146 ATCGAGCTGAACAAGGCCGGCCAGAAGCTCTACACCTCCATCGAGATCAACCCCGAATTC 6205 Query 3511 GCCAATACCGGCAAATGTTATCTGGTGGGTCTGGCCGTCACCGATGACCCGGCAAGCCTC 3570 ||| | |||||| | || || ||||| |||||||||||||| |||| || ||||| Sbjct 6206 GCCGACACCGGCGAGGCGTACCTCGTGGGCCTGGCCGTCACCGACAACCCCGCCAGCCTG 6265 Query 3571 GGCACGGAATACCTGGAATTCTGCCGC 3597 ||||| || ||||| ||| ||||| Sbjct 6266 GGCACCGAGGCGCTGGAGTTC-GCCGC 6291 >seq8333 Length=1724 Score = 187 bits (206), Expect = 5e-43 Identities = 473/702 (67%), Gaps = 48/702 (7%) Strand=Plus/Minus Query 16272 CGCGCAGACCGTTTCCAATATCATCGGCACCACCGACGAAAACGGTCAGTACACCGGACT 16331 |||| | |||| |||| |||||||||||||| ||| ||| ||| |||||| || Sbjct 1517 CGCGGAAACCGCAACCAACGTCATCGGCACCACCACCGAGGCCGGCCAGCGCACCGGCCT 1458 Query 16332 GAAAGCCCTGCTGGCGGCGGAGTCGGTAACCGGTGTTAAACCGCGTATTCTCGGCGTGCC 16391 | | |||||||||||||| ||| | | || || || ||||| || |||||| ||| Sbjct 1457 GCAGGCCCTGCTGGCGGCCGAGGGGCAATTGGGCGTGAAGCCGCGCATCATCGGCGCGCC 1398 Query 16392 GGGACTGGATACCAAAGAGGTGGCTGTTGCACTGGCATCTGTCTGTCAGAAGTTGCGCGC 16451 || ||||| ||||| | ||||| || || |||| || || ||| || | ||||| Sbjct 1397 CGGCCTGGACACCAAGGCCGTGGCCGTGGCCATGGCGTCCGTGGCGCAGCAGCTCCGCGC 1338 Query 16452 TTTCGGGTA--TATCAGCGCATGGGGCTGTAAAACCAT-----TTCCG------AGGTGA 16498 ||| || | || || | || || ||| || | ||| ||| Sbjct 1337 CTTCACCTACGTTTCGGCCCGCGGCGCC----AACGATGCCTATGCCGCCACCAAGG--- 1285 Query 16499 AAGCC---------TACCGCCAGAATTTCAGCCAGCGTGAGCTGATGGTCATCTGGCCGG 16549 ||||| |||||| | ||| | ||||| ||| ||||||| || ||||| Sbjct 1284 AAGCCGCCGTGCTCTACCGCGGCGAGTTCGGGCAGCGCGAGGTGATGGTGATGTGGCCCA 1225 Query 16550 ATTTCCTCGCATGGGATACGGTCAGCAGCACCA--CCGCCACCGCGTATGCCACCGCCCG 16607 | ||||| || ||||| ||| || | | | ||| | | ||| |||| Sbjct 1224 ACTTCCTGGCCTGGGA--CGGCGAGGCGGGCGAGGCCGTGGAGGTGCCCGCCGTCGCCTA 1167 Query 16608 TGCGCTGGGTCTGCGTGCCAAAATCGACCAGGAGCAGGGCTGGCATAAAACGCTGTCCAA 16667 ||| ||||| ||||| ||||| | || |||||| |||||||| || | | ||||| Sbjct 1166 TGCCCTGGGCCTGCGCGCCAAGCTGGATCAGGAGATTGGCTGGCACAAGTCCATTTCCAA 1107 Query 16668 CGTCGGGGTGAACGGTGTTACCGGCATCAGCGC-CTCTGTATTCTGGGATTTGCAGGAGT 16726 | | | ||| ||||| || ||||||| ||| | ||| |||| || ||||| || Sbjct 1106 CATGGTGGTCAACGGCGTGGAAGGCATCA-CGCGCGATGTGTTCTTCGACCTGCAG-AGC 1049 Query 16727 CCGGC-ACCGATGCTGACCTGTTGAACGAGTCAGGT-GTCACAACGCTGATTCGCCGTGA 16784 ||||| | |||||| | | ||||| || ||| ||||| ||||||||||| || || Sbjct 1048 CCGGCCAGCGATGCGGGCTACCTGAAC-AGCAAGGAAGTCACCACGCTGATTCGGCGCGA 990 Query 16785 CGGTTTCCGCTTCTGGGGTAACCGTACCTGCTCTGATGACCCGCTG----TTCCTCTTTG 16840 ||| | ||||||||||||| || |||||| | | || || | ||| ||||| Sbjct 989 CGGATACCGCTTCTGGGGTTCGCGCACCTGCGAGGCCG-CCGGCGGAAAGTTCGCCTTTG 931 Query 16841 AAAACTACACCCGCACCGCGCAGGTGCTGGCCGACACGATGGCTGAGGCGCACAT-GTGG 16899 | ||||||||||||||| ||||||||||||||||| || || || |||||| | || Sbjct 930 AGCCCTACACCCGCACCGCCCAGGTGCTGGCCGACACCATCGCAGAAGCGCACTTCGTCT 871 Query 16900 GCGGTGGACAAGCCCAT-CACTGCAACGCTGATTCGCGACAT 16940 | | ||||||||||| ||| | ||||| | |||||||| Sbjct 870 TC-ATCGACAAGCCCATGCAC-CCCTCGCTGGTGCGCGACAT 831 >seq1720 Length=6403 Score = 86.0 bits (94), Expect = 1e-12 Identities = 197/294 (67%), Gaps = 7/294 (2%) Strand=Plus/Plus Query 16041 CACCGTATCCACGGCCATTGTCGGCATGGTCTGCACGGCCAGCGATGCGGATGCGGAAAC 16100 || ||| ||||||||| | ||||| | || |||||||||||| || ||||||| || Sbjct 6108 CATCGTGTCCACGGCCGTGATCGGCCTCGTGGCCACGGCCAGCGACGCCGATGCGGCCAC 6167 Query 16101 CTTCCCCCTCAATAAACCGGTGCTGATTACCAATGTGCAGAGCGCAATTGCAAAGGCCGG 16160 ||||| || || ||||||||| | ||||| || | || || | |||||||| Sbjct 6168 TTTCCCGCTGAACCGTCCGGTGCTGGTCACCAAGGTCGATGCGGCCATCGGCAAGGCCGG 6227 Query 16161 TAAAACAGGCACGCTGGCGGCATCGTTGCAGGCCATCGCTGACCAGTCAAAACCGGTCAC 16220 | | ||||||||||| || || | |||||| || |||| ||||| Sbjct 6228 CACCAAGGGCACGCTGGCCCAGGCGCTGAACGCCATCAAGGAGCAGTGCCGCCCGGTGCT 6287 Query 16221 CGTTGTCGTGCGTGTGGAAGACGGCACCGGCGAAGACGAAGAAACGAAGCTCGCGCAGAC 16280 || |||||||| |||| || ||| |||| ||| | ||| ||| | ||| Sbjct 6288 GGTCGTCGTGCGCGTGGCCGATGGCGAAGGCGCCACCGAGG--CCGAGCGCCGCACCGAC 6345 Query 16281 C--GTTTCCAATATCATCGGCACCACCGACGAAAACGGTCAGTACACCGGACTG 16332 | | |||| ||||||||||||||| || ||| |||||||| || ||| Sbjct 6346 CAGGACGCCAAGGTCATCGGCACCACCGCCGGCAAC---CAGTACACGGGCCTG 6396 >seq20278 Length=663 Score = 80.6 bits (88), Expect = 6e-11 Identities = 44/44 (100%), Gaps = 0/44 (0%) Strand=Plus/Minus Query 22691 GACACCATCCCTGTCTTCCCCCACATGATGTGGGGGtttttttt 22734 |||||||||||||||||||||||||||||||||||||||||||| Sbjct 175 GACACCATCCCTGTCTTCCCCCACATGATGTGGGGGTTTTTTTT 132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107442637309620