Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_022920.1 Length=139738 Score E Sequences producing significant alignments: (Bits) Value seq3714 82.4 7e-11 >seq3714 Length=3526 Score = 82.4 bits (90), Expect = 7e-11 Identities = 153/220 (70%), Gaps = 5/220 (2%) Strand=Plus/Plus Query 134066 TGGAGACCCTGTTAAAATTATTTGCGGAGACCCTGATGCAGATA-CTGAATATGAACGTA 134124 ||| ||||| |||||||||||||| || || || ||||| || | | | | | || Sbjct 1999 TGGCGACCCAGTTAAAATTATTTGTGGTGATCCAGATGCCGAAGTCGGCAGCCCAGCTTA 2058 Query 134125 --AAGGTGCAGTAGAAGTACTT-TGGGATACATTTGGAGGTACTGAAACTGAAAAAGGGT 134181 |||| || || ||| | ||| ||||| ||||| ||||| || || |||| | Sbjct 2059 CAAAGGCGCGGTTGAA-TGCTTATGGGAAGTGTTTGGCGGTACAACGACAGACCAAGGCT 2117 Query 134182 ACAAAGTATTAGATGAACACGTAGGATTAATTTATGGAGACTCTATTAACTATGAACGTG 134241 | |||||| | |||| | || || |||||||| || ||||| |||| | || |||| Sbjct 2118 ATAAAGTACTGAATGAGCGTGTCGGCTTAATTTACGGTGACTCGATTACCCTAGACCGTG 2177 Query 134242 CTCAACAAATTTGTGAAGGATTAAAAGAAAAAGGTTTTGC 134281 | || | |||| |||||| | ||| ||||||||||| Sbjct 2178 CGCAGCGCATTTTAGAAGGACTTGAAGCCAAAGGTTTTGC 2217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 446835010911120