Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_022968.1 Length=148567 Score E Sequences producing significant alignments: (Bits) Value seq2869 82.4 7e-11 >seq2869 Length=4376 Score = 82.4 bits (90), Expect = 7e-11 Identities = 132/187 (71%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 101328 TGGTAGGTGGCGCAGTACGTGACGGTTTGCTTGGTCGTGAAGTTCATGACCGTGACTACG 101387 |||| || |||||||| || ||| || | | || || | || |||||||| |||| | Sbjct 1081 TGGTGGGCGGCGCAGTGCGCGACCGTCTTTTGGGGCGGGCCGTGCATGACCGCGACTGGG 1022 Query 101388 TGGTTGTGGGTGCAACGCACGAAGAAATGATCAATAAAGG-TTTCACCCAGGTTGGCGCT 101446 |||| || || || |||| |||| ||||| | || |||| |||| |||| Sbjct 1021 TGGTGGTCGGCGCCACGCCCGAACAAATGTCCGCGCGCGGCTTTCTGCCAGTGGGGCGGG 962 Query 101447 GCTTTTCCAGTATACCTGCATCCTGAAACCAACGAAGAGTATGCTTTGGCCCGTACCGAG 101506 ||| || || | ||| ||||| || || |||| || ||||| |||| ||||||||| Sbjct 961 ACTTC-CCGGTCTTCCTCCATCCCGAGACGCACGAGGAATATGCGCTGGCGCGTACCGAG 903 Query 101507 CGCAAGA 101513 ||||||| Sbjct 902 CGCAAGA 896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475075259957880