Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_022973.1 Length=50755 Score E Sequences producing significant alignments: (Bits) Value seq15871 87.8 6e-13 seq482 82.4 2e-11 >seq15871 Length=886 Score = 87.8 bits (96), Expect = 6e-13 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 4136 CAGTAGCTCAATTGGTAGAGCAGCGGTCTCCAAAGCCGCGAGTTGGAGGTTCGAGTCCTC 4195 ||||||||||||||| |||||||||||||||||| |||| ||||| ||||||||||| Sbjct 627 CAGTAGCTCAATTGGCAGAGCAGCGGTCTCCAAAACCGCAGGTTGGGGGTTCGAGTCCCT 686 Query 4196 CCTGGC 4201 |||||| Sbjct 687 CCTGGC 692 >seq482 Length=15596 Score = 82.4 bits (90), Expect = 2e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 4133 GGTCAGTAGCTCAATTGGTAGAGCAGCGGTCTCCAAAGCCGCGAGTTGGAGGTTCGAGTC 4192 ||||||||| |||||||||||||| ||||||||||| ||| ||||| |||||||||| Sbjct 73 GGTCAGTAGTTCAATTGGTAGAGCGTCGGTCTCCAAAACCGAATGTTGGGGGTTCGAGTC 14 Query 4193 CTCCCTGGCCCGC 4205 | ||||||| || Sbjct 13 CCTCCTGGCCTGC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 162225907604406