Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_023006.1 Length=43564 Score E Sequences producing significant alignments: (Bits) Value seq14750 188 2e-43 seq1923 127 6e-25 seq23194 116 1e-21 seq6074 109 2e-19 seq23830 87.8 5e-13 seq15331 86.0 2e-12 seq14841 82.4 2e-11 seq13261 80.6 7e-11 >seq14750 Length=960 Score = 188 bits (208), Expect = 2e-43 Identities = 254/351 (72%), Gaps = 6/351 (2%) Strand=Plus/Plus Query 37166 TGCTGGTTACCCGCAAAGGTGCTGTTCGGGCCCGCGAGGGCGACCTGGGCATCATCCCTG 37225 ||||||| |||||||| ||||| || | || || | ||||| ||||| ||||| || | Sbjct 397 TGCTGGTCACCCGCAAGGGTGCGGTGAGCGCGCGTGCTGGCGAGCTGGGGATCATTCCCG 456 Query 37226 GCTCGATGGGTGCGAAGTCATTCATCGTTCGCGGCAAGGGAAATTCCGAATCGTTCTGCT 37285 || ||||| |||||| |||||||| ||||||||||| || | || ||| | Sbjct 457 GCAGCATGGGCGCGAAGAGCTTCATCGTGCGCGGCAAGGGCAACGCGGACAGCTTCCACA 516 Query 37286 CTTGCAGCCACGGTGCCGGTCGAATGATGAGCCGGGCCGAAGCAAAACGCCGGTTCACA- 37344 ||||||||||| ||||| || || ||||||| ||| ||| | | | |||| Sbjct 517 GCTGCAGCCACGGCGCCGGCCGCGTGCTGAGCCGTACCGCCGCACGCCAGCAGATCACGC 576 Query 37345 -GTCG-AGGATCATGAGGCGGCCACCAAAGGTATCGAGTGCCGCAAAGATGCCGAAGTGA 37402 |||| || | | ||||| | | | | |||| |||||||| || || | |||| Sbjct 577 TGTCGCAGCACCGCGAGGCCACGGCGCACG---TCGAATGCCGCAAGGACGCGGGCGTGA 633 Query 37403 TCGACGAGACGCCAGCGGCTTACAAGGACATCGATGCGGTCATGGCCGCGCAATCCGCCC 37462 ||||||| |||| ||||| |||||||||||||| || || ||| ||||||| || || Sbjct 634 TCGACGAATCGCCGGCGGCGTACAAGGACATCGAGGCCGTGATGTCCGCGCAGAGCGACC 693 Query 37463 TGGTGGACATCGTGCACACGCTGCGCCAAGTCGTTTGCGTGAAGGGTTGAG 37513 ||||||| | ||||||||| ||||||| || || ||| | ||||| |||| Sbjct 694 TGGTGGAAGTGGTGCACACGTTGCGCCAGGTGGTCTGCATCAAGGGGTGAG 744 >seq1923 Length=5946 Score = 127 bits (140), Expect = 6e-25 Identities = 239/348 (69%), Gaps = 10/348 (3%) Strand=Plus/Plus Query 37166 TGCTGGTTACCCGCAAAGGTGCTGTTCGGGCCCGCGAGGGCGACCTGGGCATCATCCCTG 37225 ||||||| ||||| || || || || | |||||||| ||||| ||||||||||| || | Sbjct 4161 TGCTGGTGACCCGGAAGGGGGCCGTCAGTGCCCGCGAAGGCGAGCTGGGCATCATTCCCG 4220 Query 37226 GCTCGATGGG--TGCGAAGTCATTCATCGTTCGCGGCAAGGGAAATTCCGAATCGTTCTG 37283 || ||||| ||| || | |||||| ||||||||||| || |||| ||| Sbjct 4221 GCAGCATGGGCACGCGCAG--CTACATCGTGCGCGGCAAGGGCAACGCCGACAGCTTCCA 4278 Query 37284 CTCTTGCAGCCACGGTGCCGGTCGAATGATGAGCCGGGCCGAAGCAAAACGCCGGTTCAC 37343 | ||||||||||| ||||| || |||||||||| | | || | | | |||| Sbjct 4279 CAGCTGCAGCCACGGGGCCGGCCGGGTGATGAGCCGTGGCACGGCGCGCCAGCAGATCAC 4338 Query 37344 ---AGTCGAGGATCATGAGGCGGCCACCAAAGGTATCGAGTGCCGCAAAGATGCCGAAGT 37400 | | || | | ||||| || | | | | || |||||||| || || || Sbjct 4339 GCTGGCCCAGCACCGCGAGGCCACCGCGCACG---TGGAATGCCGCAAGGACAGCGGCGT 4395 Query 37401 GATCGACGAGACGCCAGCGGCTTACAAGGACATCGATGCGGTCATGGCCGCGCAATCCGC 37460 | | |||||| | || || || |||||| ||||| | || ||||| ||||| | Sbjct 4396 GCTGGACGAGTCACCGGCCGCGTACAAGTCGATCGACGATGTGATGGCAGCGCAGCTGGA 4455 Query 37461 CCTGGTGGACATCGTGCACACGCTGCGCCAAGTCGTTTGCGTGAAGGG 37508 |||||| || | |||||||| |||||||| || | ||||||||||| Sbjct 4456 CCTGGTCGAGGTGGTGCACACCCTGCGCCAGGTGCTGTGCGTGAAGGG 4503 >seq23194 Length=554 Score = 116 bits (128), Expect = 1e-21 Identities = 156/212 (74%), Gaps = 9/212 (4%) Strand=Plus/Plus Query 23536 CTTCCCTTGCGCAGATACTCGCCGGCAATCTCGGCGACCTTGCCGAAGAACACGACGCGG 23595 || ||||||||||| ||||||||||| |||||| ||| ||||||||||||||| |||||| Sbjct 115 CTGCCCTTGCGCAGGTACTCGCCGGCGATCTCGCCGAGCTTGCCGAAGAACACCACGCGG 174 Query 23596 TGCCATTCGGTCTTTTCCTTGCGCTCGCCGGTCTGCTTGTCCTTC--CAGGTTTCCGACG 23653 ||||||||||| ||||| | | |||| | |||||||||| || | | | | Sbjct 175 TGCCATTCGGTGCGTTCCTGCTGGTTGCCG---TCCTTGTCCTTCCGCACGCT--GGTGG 229 Query 23654 TGGCCAGGCTGATGTTGCAGA-CGGCATCGCCGTTTTGCAGGTAGCGCACTTCCGGGTCA 23712 ||||||||||||| | || || ||| |||| ||| || || ||| ||||| Sbjct 230 TGGCCAGGCTGATCCGGGTGATCGCCAT-GCCGCCCTGCGTATAACGGGTTTCTGGGTCG 288 Query 23713 TTACCCAGGCGGCCAATCAGGTCTACTTTGTT 23744 || || ||| ||| | |||| |||||||| Sbjct 289 TTGCCGAGGTTGCCGACCAGGATGACTTTGTT 320 >seq6074 Length=2299 Score = 109 bits (120), Expect = 2e-19 Identities = 152/210 (72%), Gaps = 5/210 (2%) Strand=Plus/Minus Query 23536 CTTCCCTTGCGCAGATACTCGCCGGCAATCTCGGCGACCTTGCCGAAGAACACGACGCGG 23595 || ||||||||||| ||||||||||| |||||| ||| ||||||||||||||| |||||| Sbjct 2119 CTGCCCTTGCGCAGGTACTCGCCGGCGATCTCGCCGAGCTTGCCGAAGAACACCACGCGG 2060 Query 23596 TGCCATTCGGTCTTTTCCTTGCGCTCGCCGGTCTGCTTGTCCTTCCAGGTTTCCGACGTG 23655 ||||||||||| |||| ||| | | | ||||||||| | | | ||| Sbjct 2059 TGCCATTCGGTGCGCTCCT---GCTGGTTGCCATCCTTGTCCTTGCGGACGCTGGTGGTG 2003 Query 23656 GCCAGGCTGATGTTGCAGA-CGGCATCGCCGTTTTGCAGGTAGCGCACTTCCGGGTCATT 23714 |||||||||||| | || || ||| |||| || ||| ||| |||||||| || Sbjct 2002 GCCAGGCTGATGCGGGTGATCGCCAT-GCCGCCCTGGGTGTACTTCACGTCCGGGTCGTT 1944 Query 23715 ACCCAGGCGGCCAATCAGGTCTACTTTGTT 23744 || || ||| | |||| |||||||| Sbjct 1943 GCCGAGATTGCCGACCAGGATGACTTTGTT 1914 >seq23830 Length=533 Score = 87.8 bits (96), Expect = 5e-13 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 23539 CCCTTGCGCAGATACTCGCCGGCAATCTCGGCGACCTTGCCGAAGAACACGACGCGGTGC 23598 ||||||||||| |||| ||| | |||||||| | |||| |||||||| ||||||| Sbjct 399 CCCTTGCGCAGGTACTGGCCCACGATCTCGGCCAGACGGCCGTTGAACACGATGCGGTGC 340 Query 23599 CATTCGGTCTTTTCCTTGCGCTCGCCGGTCTGCTTGTCCTTCCAGGTTTCCGACGTGGCC 23658 || ||||| ||||||| ||||||||| | |||||| |||| || | ||||| Sbjct 339 CACTCGGTGGCTTCCTTGTTCTCGCCGGTGTTCTTGTCGCGCCAGCGGTCGGTGGTGGCG 280 Query 23659 AGGCTGATGTTGCAGACGGCATCGCCGTTTTGCAGGTAGCGCACTTCCGGGTC 23711 | | ||| |||| ||| |||||| | | | | ||||| || ||||| Sbjct 279 ATGGTGACGTTGGCGACCTGGTCGCCGCTGGGGAAGGTGCGCATCTCGGGGTC 227 >seq15331 Length=923 Score = 86.0 bits (94), Expect = 2e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 21062 ATGGCGACCCCGACAGGATTCGAACCTGTGACCGTTCGCTTAGAAGGCGAATGCTCTATC 21121 |||||| |||||||||| |||||||||| |||| ||||||||||| ||||||||| Sbjct 2 ATGGCGCGCCCGACAGGAATCGAACCTGTAACCGCCGGCTTAGAAGGCCGGTGCTCTATC 61 Query 21122 CAGCTGAGCTACGGG 21136 ||| ||||||||||| Sbjct 62 CAGTTGAGCTACGGG 76 >seq14841 Length=953 Score = 82.4 bits (90), Expect = 2e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 21062 ATGGCGACCCCGACAGGATTCGAACCTGTGACCGTTCGCTTAGAAGGCGAATGCTCTATC 21121 ||||||||||| ||||| ||||||||| |||| ||||||||||| ||||||||| Sbjct 100 ATGGCGACCCCTGCAGGACTCGAACCTGCGACCTACTGCTTAGAAGGCAGTTGCTCTATC 41 Query 21122 CAGCTGAGCTACGGGGCC 21139 ||| ||||||| |||||| Sbjct 40 CAGTTGAGCTAAGGGGCC 23 >seq13261 Length=1077 Score = 80.6 bits (88), Expect = 7e-11 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 21063 TGGCGACCCCGACAGGATTCGAACCTGTGACCGTTCGCTTAGAAGGCGAATGCTCTATCC 21122 ||||| |||||||||| |||||||||| |||| ||||||||||| |||||||||| Sbjct 840 TGGCGCGCCCGACAGGACTCGAACCTGTAACCGCCGGCTTAGAAGGCCGGTGCTCTATCC 781 Query 21123 AGCTGAGCTACGGG 21136 | ||||||||||| Sbjct 780 GGTTGAGCTACGGG 767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139224418920468