Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq14623 95.1 1e-14 seq25614 89.7 4e-13 seq32362 84.2 2e-11 >seq14623 Length=969 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || ||||||||||| ||||||| || |||||||| | ||| |||| ||| | Sbjct 718 ATGCAGATCTTTGTCAAAACCCTAACAGGTAAGACCATTACTTTGGAAGTGGAGAGCTCG 777 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | | || || ||||| || || |||||| | ||| || || Sbjct 778 -GACACCATCGACAATGTGAAGGCTAAGATACAGGACAAGGAAGGCATCCCCCCTGACCA 836 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | || || | ||| || |||||||| || || | | ||| | || |||||||| Sbjct 837 GCAGCGCCTGATCTTTGCTGGAAAACAGCTCGAAGATGGCCGAACCCTTGCTGACTACAA 896 Query 107735 CATTCAAAAGGAGTCTACGTTGCA 107758 ||||| || || ||||| ||||| Sbjct 897 TATTCAGAAAGAATCTACCTTGCA 920 >seq25614 Length=477 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| ||||| ||||| |||| || || || ||||| | ||| ||| ||| | Sbjct 270 ATGCAAATCTTTGTAAAAACACTAACTGGAAAGACAATTACATTGGAAGTTGAGAGCTCG 211 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || | | | | || || ||||| || || ||||| | ||| || || Sbjct 210 -GACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCTGACCA 152 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| ||||| | || ||||| ||||||||||| | || || |||| || ||||| Sbjct 151 GCAGAGGCTTATCTTCGCTGGTAAGCAGCTGGAGGATGGCAGGACCTTGGCTGATTACAA 92 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||||||||| || || |||| ||||| Sbjct 91 TATTCAAAAGGAATCGACCCTGCATTTGGTG 61 >seq32362 Length=298 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || ||||| || || || |||||||| || || || | || ||| ||| Sbjct 6 ATGCAGATATTTGTGAAGACGTTGACAGGCAAGACTATCACACTGGAGGTTGAGAGCTC- 64 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 |||||| | | | |||||| || ||| || || ||||| | || ||||| Sbjct 65 CGATACGATTGATAACGTAAAAGCGAAAATTCAGGACAAGGAAGGGATTCCACCTGATCA 124 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | ||| ||||||||||||||||| | ||| |||| || || || Sbjct 125 GCAGAGGCTCATATTTGCTGGTAAACAGCTGGAGGATGGGCGAACTCTGGCCGATTATAA 184 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||| || ||||| ||||| | ||| | || ||| | |||| || || Sbjct 185 CATCCAGAAGGAATCTACACTTCACCTTGTCTTGCGTCTGCGTGGTGG 232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398704033868371