Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_023498.1 Length=62466 Score E Sequences producing significant alignments: (Bits) Value seq1923 107 8e-19 seq14750 82.4 3e-11 >seq1923 Length=5946 Score = 107 bits (118), Expect = 8e-19 Identities = 344/523 (66%), Gaps = 28/523 (5%) Strand=Plus/Plus Query 56168 CAGCTCGGCACCCTCGGCGGCGGTAACCATTTCATCGAGCTGTGCCTCGATCACCTTGAC 56227 ||||| ||||| || || ||||| ||||| |||||||| |||||||| || | ||| Sbjct 3764 CAGCTGGGCACGCTGGGTGGCGGCAACCACTTCATCGAACTGTGCCTGGACGAGACCGAC 3823 Query 56228 CGGGTGTGGCTGTTCCTGCACTCCGGTTCGCGTGGCGTCGGCAACAAGATCGCCCAGCGG 56287 ||||||| || | |||||| ||| ||||| ||| ||||||| ||||| | | | Sbjct 3824 ACGGTGTGGGTGATGCTGCACAGCGGATCGCGCGGCACCGGCAACCTGATCGGC-ACCTA 3882 Query 56288 CAT-ATCTCTGCGGCGCAGGGGTA--TTGCCAGGCGCAAG---GGCTGC-ACGTCCCGCA 56340 | | ||| ||||| | | | | ||| ||||| | |||| | || | ||| | Sbjct 3883 CTTCATCGAGAAGGCGCGCGAGGAACTGGCCCGGCGCGTGCTCGGCTTCCACCTGCCGGA 3942 Query 56341 CCGCGACCTCGCGTACCTCGTCGAGGGCACTGTCGA-GTTCGACCGCTACCTCGTCGAGC 56399 | ||||| |||| | || | || ||| | || |||||| |||| ||| | Sbjct 3943 CAAGGACCTGGCGTTCTTCATGGAAGGCGA-GCCGCTGTTCGATGACTACGTCGAAGCCG 4001 Query 56400 TGCGGTGGGCGCAGCGGTTCGCGTACTACAACCGCGCCGAGATGATGGACCGTTTCGCGC 56459 || |||||||||| | ||| | ||||||| | ||||||| |||||| Sbjct 4002 TGTCGTGGGCGCAGGACTACGCCCGGCAGAACCGCGAGGCGATGATG-------TCGCGC 4054 Query 56460 AGGCGTTCCGGCATTGGATCGGCGCCGACGCC--CCGATCGACGAGCTGGTCGTCGA-GA 56516 || ||| || ||||| ||| |||| | |||||| | ||| | Sbjct 4055 GTGCTGGCCGAGAT-------GCGCCACCGCTTGCCGAAGTTCCAGCTGGCAG-CGATGG 4106 Query 56517 CGATCAACACGCATCACAACTACACGCAGAAGGAGCTGCACGGCGGCCGTGAGGTGTGGT 56576 || | ||| || ||||||||| ||||||||| |||| ||||| || || | Sbjct 4107 CGGTGAACTGCCACCACAACTACGTGCAGAAGGAAACGCACCACGGCCAGGAACTGCTGG 4166 Query 56577 TGACCCGCAAGGGTGCGATCGACGCGCACGAGGGTGTGCGGGGCCTGATTCCCGGCAGCA 56636 ||||||| ||||| || || || | ||| || | || |||| | ||||||||||||| Sbjct 4167 TGACCCGGAAGGGGGCCGTCAGTGCCCGCGAAGGCGAGCTGGGCATCATTCCCGGCAGCA 4226 Query 56637 TGGGCACTTGCTCGTATGTCGTGACGGGCAAGGGCAATCCCGA 56679 ||||||| || || ||||| ||||||||||| |||| Sbjct 4227 TGGGCACGCGCAGCTACATCGTGCGCGGCAAGGGCAACGCCGA 4269 >seq14750 Length=960 Score = 82.4 bits (90), Expect = 3e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 56517 CGATCAACACGCATCACAACTACACGCAGAAGGAGCTGCACGGCGGCCGTGAGGTGTGGT 56576 || ||||| || ||||||||| |||||||||| |||||| ||| ||| || | Sbjct 343 CGGTCAACTGCCACCACAACTACGTGCAGAAGGAGACGCACGGTGGCGAGGAGCTGCTGG 402 Query 56577 TGACCCGCAAGGGTGCGATCGACGCGCACGAGGGTGTGCGGGGCCTGATTCCCGGCAGCA 56636 | ||||||||||||||| | ||||| | || | || ||| | ||||||||||||| Sbjct 403 TCACCCGCAAGGGTGCGGTGAGCGCGCGTGCTGGCGAGCTGGGGATCATTCCCGGCAGCA 462 Query 56637 TGGGC 56641 ||||| Sbjct 463 TGGGC 467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 199679874867033