Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_023549.1 Length=56789 Score E Sequences producing significant alignments: (Bits) Value seq18880 95.1 4e-15 seq13906 87.8 7e-13 >seq18880 Length=726 Score = 95.1 bits (104), Expect = 4e-15 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 50105 GTCTGGTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTA 50164 || ||||||||| ||| ||||||||||| ||||||| |||| |||||||||| ||||||| Sbjct 725 GTTTGGTTGCGGGGGCAGGATTTGAACCTGCGGCCTTCAGGTTATGAGCCTGACGAGCTA 666 Query 50165 CCGAACTGCTCTACTCCGCATT 50186 ||| |||||| || |||| || Sbjct 665 CCGGGCTGCTCCACCCCGCGTT 644 >seq13906 Length=1026 Score = 87.8 bits (96), Expect = 7e-13 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 50108 TGGTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCG 50167 ||||||||| ||| ||||||||||| | ||||| |||| |||||||||| |||||||||| Sbjct 822 TGGTTGCGGGGGCAGGATTTGAACCTGTGGCCTTCAGGTTATGAGCCTGACGAGCTACCG 763 Query 50168 AACTGCTCTACTCCGC 50183 |||||| || |||| Sbjct 762 GGCTGCTCCACCCCGC 747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 181526558796018