Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_023557.1 Length=271084 Score E Sequences producing significant alignments: (Bits) Value seq11529 95.1 2e-14 seq1923 87.8 3e-12 >seq11529 Length=1246 Score = 95.1 bits (104), Expect = 2e-14 Identities = 73/87 (84%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 165180 TCCAAAATTATTGGTCTATAGTTCAGTCGGTAGAACAGCGGACTGTTAATCCGTAGGTCG 165239 |||| || ||| ||| |||||||||||||||||| |||||||||||||||||| ||| Sbjct 378 TCCACAACGATTCCTCTGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCA 437 Query 165240 CTGGTTCGAATCCAGCTAGACCAGCCA 165266 ||||||||| ||||| ||| ||||| Sbjct 438 CTGGTTCGAGTCCAGTCAGAGGAGCCA 464 >seq1923 Length=5946 Score = 87.8 bits (96), Expect = 3e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 44642 GCCGTGATGCCTGATGTACACTGGGGAATGGGCGCGACCATTGGTTCGGTTATTGCGACT 44701 ||||||||||| || || ||| ||| | |||||||||| | || ||||| || |||| Sbjct 3431 GCCGTGATGCCGGACGTGCACCTGGGCAAGGGCGCGACCGTCGGCTCGGTGATCCCGACC 3490 Query 44702 AAAGGTGCGATTATTCCTGCCGCAGTGGGTGTTGATATTGGTTGTGGGATGATTGCCCAA 44761 |||||||| || || |||||||| || || || || || || || ||| ||| | Sbjct 3491 CGCGGTGCGATCATCCCGGCCGCAGTCGGCGTCGACATCGGCTGCGGCATGGCGGCCGTA 3550 Query 44762 CAAACCTCGCTGGTTGCTGCTGACCTGCCCGATAACCT 44799 | ||| ||||| || |||||||||||| |||| Sbjct 3551 CGCACCACGCTGCGCGCCAACGACCTGCCCGATGACCT 3588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 866955494691360