Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_023561.1 Length=173276 Score E Sequences producing significant alignments: (Bits) Value seq29522 91.5 2e-13 seq10753 86.0 7e-12 seq7046 86.0 7e-12 seq15025 84.2 2e-11 seq34590 82.4 8e-11 seq883 82.4 8e-11 >seq29522 Length=371 Score = 91.5 bits (100), Expect = 2e-13 Identities = 78/94 (83%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 74593 TATTTTCCTC-AGAATTTGGTGACCCCAGCAGGACTCGAACCTGCAACCTAGCGATTATG 74651 ||||||| | | ||||||||| |||| || ||||| ||||| || ||| |||||||||| Sbjct 294 TATTTTCTGCTAAAATTTGGTGGCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATG 235 Query 74652 AGTCGCGTGCTCTAACCAATTGAGCTATAGGGCC 74685 |||||| |||||||||| | ||||||| ||||| Sbjct 234 AGTCGCCTGCTCTAACC-ACTGAGCTAAGGGGCC 202 >seq10753 Length=1336 Score = 86.0 bits (94), Expect = 7e-12 Identities = 78/94 (83%), Gaps = 6/94 (6%) Strand=Plus/Minus Query 76069 TGGAGGAAGCGGTGGGATTCGAACCCACGGACCGTATCACTACGGCCTC--CGGTTTTCA 76126 ||| |||||||||| ||||||||| |||||| | |||| || |||| ||||||||| Sbjct 676 TGGCGGAAGCGGTGAGATTCGAACTCACGGAG-GACTCAC-AC--CCTCGTCGGTTTTCA 621 Query 76127 AGACCGGTGTAATAAGCCGCTCTACCACGCTTCC 76160 ||||||||| | ||| ||||||| |||||||||| Sbjct 620 AGACCGGTGCATTAAACCGCTCTGCCACGCTTCC 587 >seq7046 Length=2020 Score = 86.0 bits (94), Expect = 7e-12 Identities = 78/94 (83%), Gaps = 6/94 (6%) Strand=Plus/Minus Query 76069 TGGAGGAAGCGGTGGGATTCGAACCCACGGACCGTATCACTACGGCCTC--CGGTTTTCA 76126 ||| |||||||||| ||||||||| |||||| | |||| || |||| ||||||||| Sbjct 762 TGGCGGAAGCGGTGAGATTCGAACTCACGGAG-GACTCAC-AC--CCTCGTCGGTTTTCA 707 Query 76127 AGACCGGTGTAATAAGCCGCTCTACCACGCTTCC 76160 ||||||||| | ||| ||||||| |||||||||| Sbjct 706 AGACCGGTGCATTAAACCGCTCTGCCACGCTTCC 673 >seq15025 Length=942 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 74608 TTGGTGACCCCAGCAGGACTCGAACCTGCAACCTAGCGATTATGAGTCGCGTGCTCTAAC 74667 |||||| |||| ||||||||||||||| |||| | ||||||||||| ||||||||| Sbjct 106 TTGGTGGGCCCACCAGGACTCGAACCTGGAACCAAAGGATTATGAGTCCTCTGCTCTAAC 47 Query 74668 CAATTGAGCTATAGGGCC 74685 | ||||||||||||| || Sbjct 46 C-ATTGAGCTATAGGCCC 30 >seq34590 Length=233 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 74609 TGGTGACCCCAGCAGGACTCGAACCTGCAACCTAGCGATTATGAGTCGCGTGCTCTAACC 74668 ||||| |||| ||||| ||||||||| |||| || ||||||||||| | |||||||||| Sbjct 233 TGGTGGGCCCACCAGGATTCGAACCTGGAACCAAGGGATTATGAGTCCCCTGCTCTAACC 174 Query 74669 AATTGAGCTATAGGGCC 74685 |||||||||||| || Sbjct 173 -GTTGAGCTATAGGCCC 158 >seq883 Length=10367 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 72102 TTTGGTGCCGGTTAACGGATTCGAACCGCTGACCCTCTCATTACAAATGAGCTGCTCTAC 72161 ||||||||||| | || |||||| | |||| ||||||||| ||||||||||||||| Sbjct 6128 TTTGGTGCCGGAGAGATGAATCGAACACCCGACCTTCTCATTACGAATGAGCTGCTCTAC 6187 Query 72162 CAACTGAGCTAAACCGGC 72179 | ||||||||| |||||| Sbjct 6188 CGACTGAGCTACACCGGC 6205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 554108934631840