Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_023573.1 Length=142094 Score E Sequences producing significant alignments: (Bits) Value seq3714 91.5 1e-13 >seq3714 Length=3526 Score = 91.5 bits (100), Expect = 1e-13 Identities = 155/220 (70%), Gaps = 5/220 (2%) Strand=Plus/Plus Query 131082 TGGAGACCCTGTTAAAATTATTTGCGGAGACCCTGATGCAGATA-CTGAATATGAACGTA 131140 ||| ||||| |||||||||||||| || || || ||||| || | | | | | || Sbjct 1999 TGGCGACCCAGTTAAAATTATTTGTGGTGATCCAGATGCCGAAGTCGGCAGCCCAGCTTA 2058 Query 131141 --AAGGTGCAGTAGAAGTACTT-TGGGATACCTTTGGAGGTACTGAAACTGAAAAAGGGT 131197 |||| || || ||| | ||| ||||| ||||| ||||| || || |||| | Sbjct 2059 CAAAGGCGCGGTTGAA-TGCTTATGGGAAGTGTTTGGCGGTACAACGACAGACCAAGGCT 2117 Query 131198 ACAAAGTATTAGATGAACATGTAGGATTAATTTACGGAGACTCTATTAACTATGAACGTG 131257 | |||||| | |||| | ||| || ||||||||||| ||||| |||| | || |||| Sbjct 2118 ATAAAGTACTGAATGAGCGTGTCGGCTTAATTTACGGTGACTCGATTACCCTAGACCGTG 2177 Query 131258 CTCAACAAATTTGTGAAGGATTAAAAGAAAAAGGTTTTGC 131297 | || | |||| |||||| | ||| ||||||||||| Sbjct 2178 CGCAGCGCATTTTAGAAGGACTTGAAGCCAAAGGTTTTGC 2217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 454370861715760