Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_023575.1 Length=45550 Score E Sequences producing significant alignments: (Bits) Value seq23194 163 8e-36 seq6074 116 1e-21 seq23830 107 6e-19 seq7880 87.8 5e-13 >seq23194 Length=554 Score = 163 bits (180), Expect = 8e-36 Identities = 245/337 (73%), Gaps = 22/337 (7%) Strand=Plus/Plus Query 30056 CCGCCAAACATCTGCATCTGCCCGTGCATGTCGACGATGATCTCTGTTGTGTAGCGGTCC 30115 ||||| | ||||||||||| |||| ||||||| || || | ||| ||| Sbjct 7 CCGCCGAGCATCTGCATCTC---------GTCGGCGATGATGTCGGTGGAGTACTTCTCC 57 Query 30116 TGACCGTCCTGCGCCTGCC-ACTT-TCG-AGTTCTGAGTGAACCCTCGACGTACAGTT-G 30171 ||||||||||| ||| | |||| ||| || | || || ||||||||||||| | Sbjct 58 TGACCGTCCTG-GCCGGTGTACTTGTCGTAG--CGGATGGAGCCCTCGACGTACACCGAG 114 Query 30172 CTGACCCTTCTTTACGTGCTGCCCGACGATCTCCGCCAACTTCCCGAAGAACACCACGCG 30231 ||| ||||| | || || ||| ||||||| | | ||| ||||||||||||||||| Sbjct 115 CTG-CCCTTGCGCAGGTACTCGCCGGCGATCTCGCCGAGCTTGCCGAAGAACACCACGCG 173 Query 30232 GTGCCATTCGGTGCGCTCCTGTTGCTGGCCGGTCTGCTTGTCCTTCCAGCTCTC-GCTGG 30290 ||||||||||||||| ||||| || | |||| | ||||||||||| || | | | ||| Sbjct 174 GTGCCATTCGGTGCGTTCCTGCTGGTTGCCG---TCCTTGTCCTTCC-GCACGCTGGTGG 229 Query 30291 TGGCGAGGGTGATGTTGGTCACCGCATTGCCGTTGGGCATATAGCGAGTTTCCGGGTCAC 30350 |||| ||| |||| ||| | ||| ||||| || |||| || ||||| ||||| Sbjct 230 TGGCCAGGCTGATCCGGGTGATCGCCATGCCGCCCTGCGTATAACGGGTTTCTGGGTCGT 289 Query 30351 CACCGACGTTGCCAACCAGAATGACTTTGTTAACGCC 30387 |||| |||||| ||||| ||||||||||| | ||| Sbjct 290 TGCCGAGGTTGCCGACCAGGATGACTTTGTTGATGCC 326 >seq6074 Length=2299 Score = 116 bits (128), Expect = 1e-21 Identities = 147/197 (75%), Gaps = 9/197 (5%) Strand=Plus/Minus Query 30194 CCGACGATCTCCGCCAACTTCCCGAAGAACACCACGCGGTGCCATTCGGTGCGCTCCTGT 30253 ||| ||||||| | | ||| |||||||||||||||||||||||||||||||||||||| Sbjct 2098 CCGGCGATCTCGCCGAGCTTGCCGAAGAACACCACGCGGTGCCATTCGGTGCGCTCCTGC 2039 Query 30254 TGCTGGCCGGTCTGCTTGTCCTTCCAG-CTCTCGCTGGTGGCGAGGGTGATGTTGGTCAC 30312 || | ||| | ||||||||| | | | || | ||||||| ||| ||||| ||| | Sbjct 2038 TGGTTGCC---ATCCTTGTCCTTGCGGACGCT-GGTGGTGGCCAGGCTGATGCGGGTGAT 1983 Query 30313 CGCATTGCCG--TTGGGCATATAGCGAGTTTCCGGGTCACCACCGACGTTGCCAACCAGA 30370 ||| ||||| |||| || | | |||||||| |||| ||||| ||||| Sbjct 1982 CGCCATGCCGCCCTGGGTGTACTTCACG--TCCGGGTCGTTGCCGAGATTGCCGACCAGG 1925 Query 30371 ATGACTTTGTTAACGCC 30387 ||||||||||| | ||| Sbjct 1924 ATGACTTTGTTGATGCC 1908 >seq23830 Length=533 Score = 107 bits (118), Expect = 6e-19 Identities = 143/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 30187 GTGCTGCCCGACGATCTCCGCCAACTTCCCGAAGAACACCACGCGGTGCCATTCGGTGCG 30246 || ||| || |||||||| |||| ||| |||||| | ||||||||| |||||| Sbjct 388 GTACTGGCCCACGATCTCGGCCAGACGGCCGTTGAACACGATGCGGTGCCACTCGGTGGC 329 Query 30247 CTCCTGTTGCTGGCCGGTCTGCTTGTCCTTCCAGCTCTCGCTGGTGGCGAGGGTGATGTT 30306 |||| | || |||||| | |||||| ||||| ||| ||||||||| ||||| ||| Sbjct 328 TTCCTTGTTCTCGCCGGTGTTCTTGTCGCGCCAGCGGTCGGTGGTGGCGATGGTGACGTT 269 Query 30307 GGTCACCGCATTGCCGTTGGGCATATAGCGAGTTTCCGGGTCACCACCGACGTTGCCAAC 30366 || ||| | |||| |||| | ||| | || ||||| | |||| |||||| || Sbjct 268 GGCGACCTGGTCGCCGCTGGGGAAGGTGCGCATCTCGGGGTCGCGCCCGAGGTTGCCGAC 209 Query 30367 CAGAATGACTTTGTTAACG 30385 | ||||||||||| ||| Sbjct 208 GATGATGACTTTGTTGACG 190 >seq7880 Length=1825 Score = 87.8 bits (96), Expect = 5e-13 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 21471 ACGGATTCGAAATCCGTTGAGTCAGCAATGGCTCCTAGGGTTCAAATCCCTATCTCTCCG 21530 ||||||||||||||||||| ||||| |||| |||||||||||||||||||||| ||| Sbjct 1184 ACGGATTCGAAATCCGTTGTATCAGCGATGGTACCTAGGGTTCAAATCCCTATCTTCCCG 1125 Query 21531 CCATAT 21536 |||||| Sbjct 1124 CCATAT 1119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145576936863216