Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_023581.1 Length=77792 Score E Sequences producing significant alignments: (Bits) Value seq3205 154 7e-33 >seq3205 Length=3996 Score = 154 bits (170), Expect = 7e-33 Identities = 212/294 (72%), Gaps = 2/294 (1%) Strand=Plus/Minus Query 37819 TGGCTTTGATCAGATTGATTGGGTTATTAATGAAATTAAAACTAACCCTACATCACGCCG 37878 ||| ||||| || ||| | ||| | ||||||||||| ||||| || || | |||||||| Sbjct 2497 TGGTTTTGACCAAATTAAATGGTTAATTAATGAAATCAAAACCAATCCGAATTCACGCCG 2438 Query 37879 TCTAATTGTCAATGGATGGAATCCACATGAAG-TAGATAAGGCAGCATTGCCACCTTGTC 37937 | ||||| | || ||||||||| |||||| | || ||| || || |||||||| | Sbjct 2437 TTTAATTATTTCAGGCTGGAATCCAAATGAAGCTGGACAAGTG-GCTTTACCACCTTGCC 2379 Query 37938 ATACATTGTTCCAGTTCTTTGTAGAGAATGGAAAACTAAGCTGTCAGTTATATCAACGTA 37997 | || | || || || || ||| | || ||| | || ||| | |||||||||| Sbjct 2378 ACACGCTTTTTCAATTTTTCGTACAAGATAACAAATTGTCATGCCAGCTTTATCAACGTA 2319 Query 37998 GTGCTGATTTCTTCTTAGGTGTTCCATTTAATATTGCAAGCTATGCGTTGCTTACACATA 38057 |||| || | || ||||| ||||| ||||| ||||| || ||||| || || || || | Sbjct 2318 GTGCAGACGTGTTTTTAGGGGTTCCTTTTAACATTGCCAGTTATGCTTTACTCACTCACA 2259 Query 38058 TCGTAGCTGCAGAATGTGGATTAGAAGTTGGTGAATTTGTCTGGACTGGTGGTG 38111 | | ||| || || || |||| ||| ||||| ||||| ||||| || |||| Sbjct 2258 TGATTGCTCAAGTGTGCGGTTTAGGAGTCGGTGACTTTGTTTGGACAGGCGGTG 2205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 248701832709187