Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq16212 89.7 6e-13 seq12193 84.2 3e-11 >seq16212 Length=864 Score = 89.7 bits (98), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 19498 TTCCTCTATAGCTCAGATGGTAGAGCGAGTGACTGTTAATCACTATGTCCCTGGTTCGAT 19557 |||||| ||||||||| |||||||||| ||||||||||| || ||||||||||||| Sbjct 169 TTCCTCAATAGCTCAGTTGGTAGAGCGCCGGACTGTTAATCCGTAGGTCCCTGGTTCGAG 110 Query 19558 CCCAGGTGGAGGAG 19571 ||||||| |||||| Sbjct 109 CCCAGGTTGAGGAG 96 >seq12193 Length=1180 Score = 84.2 bits (92), Expect = 3e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 102134 GGTCCTCCTGGCGCAGGACATTTTGTAAAGATGGTTCATAATGGTATCGAATATGGAATC 102193 ||||| | ||||| || || || || |||||||| ||||| || |||||||||||| || Sbjct 688 GGTCCGGCCGGCGCCGGCCACTTCGTCAAGATGGTGCATAACGGCATCGAATATGGAGTC 747 Query 102194 ATGCAAGCATACGCCGAAGGCTTTAATATCCTGCATGAAGCTAATGCTGGG 102244 ||| ||| || ||||||||||| || || ||| | | || || || ||| Sbjct 748 ATGGCAGCTTATGCCGAAGGCTTAAACATACTGAAAGCCGCCAACGCCGGG 798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605398139917240